View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_high_74 (Length: 208)
Name: NF15254_high_74
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_74 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 39478552 - 39478727
Alignment:
| Q |
17 |
acaatcaatgtcgatatagcacctaaactgaataaatagagacagtgttagattggtctgtacttgataaacaagacccgaaataattgtacagatagga |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
39478552 |
acaatcaatgtcgatatagcgcctaaactgaataaatggagacagtgttagattggtccgtacttcataaacaagacccgaaataattgcacagatagga |
39478651 |
T |
|
| Q |
117 |
ctatcaagtgcccctcaatgtttgttaggatatcaaacctacattttaactcatagagagattacactatttgcatat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39478652 |
ctatcaagtgcccctcaatgtttgttaggatatcaaacctacattttaactc--agagagattacactatttgcatat |
39478727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 39397341 - 39397418
Alignment:
| Q |
111 |
ataggactatcaagtgcccctcaatg-tttgttaggatatcaaacctacattttaactcatagagagattacactatttgca |
191 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
39397341 |
ataggactactaagtgaccctcaatggtttgttaggatatcaaacccacattttaactc----agagattacattatttgca |
39397418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 39414271 - 39414341
Alignment:
| Q |
97 |
aaataattgtacagataggactatcaagtgcccctcaatgtttgttaggatatcaaacctacattttaact |
167 |
Q |
| |
|
||||| ||| || ||||||||||| ||||||||||||||| |||| || |||| |||||||||||||||| |
|
|
| T |
39414271 |
aaatagttgcactgataggactattaagtgcccctcaatggttgtcagaatattgaacctacattttaact |
39414341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 39468942 - 39468886
Alignment:
| Q |
17 |
acaatcaatgtcgatatagcacctaaactgaataaatagagacagtgttagattggt |
73 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||| |||| |||||| ||||||| |
|
|
| T |
39468942 |
acaatcaatgtcaatatagcaccttaactgaatgaatggagatagtgttggattggt |
39468886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 39397249 - 39397301
Alignment:
| Q |
17 |
acaatcaatgtcgatatagcacctaaactgaataaatagagacagtgttagat |
69 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||| ||| |||| |||||||||| |
|
|
| T |
39397249 |
acaatcaatgtcaatataggaccttaactgaatcaatggagatagtgttagat |
39397301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 16114002 - 16113953
Alignment:
| Q |
17 |
acaatcaatgtcgatatagcacctaaactgaataaatagagacagtgtta |
66 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
16114002 |
acaatcaatgtcaatatcgcaccaaaactaaataaatggagacagtgtta |
16113953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University