View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_1 (Length: 1007)
Name: NF15254_low_1
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 32 - 408
Target Start/End: Complemental strand, 32941720 - 32941335
Alignment:
| Q |
32 |
ataagaaaattatttctacatctacaattagatgaatatgttcatcatatcttactttaaaagtaatctgaatcaacaagtttgcttattagttaaagca |
131 |
Q |
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| T |
32941720 |
ataagaaagttatttctacatctacaattagatgaatatgttcatcatatcttactttcaaagtaatctgaatcaaccagtctgcttattagttaaagca |
32941621 |
T |
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| Q |
132 |
ggaagtgttacgatttattgattcaacnnnnnnn-gattaaatagtgagattgatatggcacgagagacatgnnnnnnnnnnnnncttgaagaggacgaa |
230 |
Q |
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| T |
32941620 |
ggaagtgttacgatttattgattcaacttttttttgattaaatagtgagattgatatggcacgagagacatgaaaaaaagaaaaacttggagaggacgaa |
32941521 |
T |
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| Q |
231 |
taatttcacgtttaaaattttcga--------attggtggtagttgaataatgaaattgattgcacatggttggtttttgcctaaaaaa-tgcatctgag |
321 |
Q |
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| T |
32941520 |
taatttcacgtttaaaattttggagttggagaattggtggtagttgaataatgaaattgattgcacatggttggtttt-gcctaaaaaaatgcatctgag |
32941422 |
T |
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| Q |
322 |
ttgagttttaggttgttgagcggcctaatgacgccatgtttgaaagttgtaatttcatcttgttaaaatatatatattttttgtaat |
408 |
Q |
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| T |
32941421 |
ttgagttttaggttgttgagcggcctaatgacgccatgtttgaaagttgtaatttcatcttgttaaaatatatatattttttgtaat |
32941335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 515 - 735
Target Start/End: Complemental strand, 32941278 - 32941058
Alignment:
| Q |
515 |
ggtgaattgtatatatgactttaactacgtggattattgtaggtgatgttcacaaataggaaagaacgaggtgagctattagatggtttagtaattagca |
614 |
Q |
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| T |
32941278 |
ggtgaattgtatatatgactttaactacgtggattattgtaggtgatgttcacaaataggaaagaacgaggtgagctattagatggtttagtaattagca |
32941179 |
T |
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| Q |
615 |
ataaagacgtcagcattccaaatttctcccaggtaatataattttgttataaggagataatataattttagtttgtaattcaaattctatgtgaaatatt |
714 |
Q |
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| T |
32941178 |
ataaagacgtcagtattccaaatttctcccaggtaatataattttgttataaggagataatataattttagtttgtaattcaaattctatgtgaaatatt |
32941079 |
T |
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| Q |
715 |
tgtttgaaatataaatttgga |
735 |
Q |
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| T |
32941078 |
tgtttgaaatataaatttgga |
32941058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 775 - 992
Target Start/End: Complemental strand, 32941041 - 32940829
Alignment:
| Q |
775 |
aaatgtgtttcatgagtcattttgttaaagctgaatttagagaatcttgaatatacnnnnnnnnnnnngaagaaaatctt-------actttgaaattcc |
867 |
Q |
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| T |
32941041 |
aaatgtgtttcatgagtcattttgttaaagctgaatttagagaatcttgaatatacttttttctttttgaagaaaatcttgaataatactttgaaattcc |
32940942 |
T |
|
| Q |
868 |
ctcattttataaagagaaacacttgatggtctttataattttttcaatccctcgtccttttgacccaaatatttagaattcttatttggaatttggaacc |
967 |
Q |
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| T |
32940941 |
ctcattttataaat------------tggtctttataattttttcaatccctcgtccttttgacccaaatatttagaattcttatttggaatttggaacc |
32940854 |
T |
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| Q |
968 |
acatttcttttaataattctatttt |
992 |
Q |
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| T |
32940853 |
acatttcttttgatatttctatttt |
32940829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 453 - 488
Target Start/End: Complemental strand, 32941328 - 32941293
Alignment:
| Q |
453 |
ctcataaaaaagtagttttgtctattacgtatgctt |
488 |
Q |
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| T |
32941328 |
ctcataaaaaagtagttttgtctattacgtatgctt |
32941293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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