View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_11 (Length: 578)

Name: NF15254_low_11
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_11
NF15254_low_11
[»] chr5 (11 HSPs)
chr5 (1-562)||(31495549-31496110)
chr5 (39-449)||(40844117-40844535)
chr5 (107-253)||(31461311-31461456)
chr5 (107-247)||(31388646-31388785)
chr5 (183-297)||(31477045-31477159)
chr5 (117-266)||(31372553-31372702)
chr5 (492-558)||(31388169-31388235)
chr5 (117-266)||(31325122-31325271)
chr5 (492-558)||(31460776-31460842)
chr5 (481-535)||(40844022-40844076)
chr5 (336-380)||(31476312-31476357)
[»] chr6 (2 HSPs)
chr6 (1-88)||(140185-140272)
chr6 (1-88)||(148206-148293)
[»] chr4 (1 HSPs)
chr4 (210-322)||(8038681-8038795)


Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 31496110 - 31495549
Alignment:
Q  1 agaaatcatgctcaataggtctggtttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaacacccaaatgagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31496110 agaaatcatgctcaataggtctggtttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaacacccaaatgagct 31496011  T
Q  101 ctcagcaagaatctctttgaaagtttccattttttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31496010 ctcagcaagaatctctttgaaagtttccattttttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagt 31495911  T
Q  201 tccactttccaaaaagatgattgaaagaagagctgcttgcataagaaatgaatccgataatacttgnnnnnnntccaaaaattctccattgatttttctg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||| |||||||||||||||||||||||    
T  31495910 tccactttccaaaaagatgattgaaagaagagctgcttgcataagaaatgaatcccataatacttgaaaaaaatcctaaaattctccattgatttttctg 31495811  T
Q  301 tattagtctattggaaattcttatgggcatagttttttaaagggtagtgcgttaatttctatttggattctaagactgatatgttttccttagagtcaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31495810 tattagtctattggaaattcttatgggcatagttttttaaagggtagtgcgttaatttctatttggattctaagactgatatgttttccttagagtcaga 31495711  T
Q  401 gaggggttagaggtaggcaaaaatgcataatcaagtgaacgaaaattattcagtttttatgactagaaaaatatatttaatgacaatatacgttgaattt 500  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31495710 gaggggttagaggtaggaaaaaatgcataatcaagtgaatgaaaattattcagtttttatgactagaaaaatatatttaatgacaatatacgttgaattt 31495611  T
Q  501 gtattgcaaataagacttggacagttgtccttgaaaagtagtagttagtaattggaccatat 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31495610 gtattgcaaataagacttggacagttgtccttgaaaagtagtagttagtaattggaccatat 31495549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 39 - 449
Target Start/End: Complemental strand, 40844535 - 40844117
Alignment:
Q  39 ctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaacacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaa 138  Q
    ||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  40844535 ctttatcagatacaaaagagtataaagatgttagcaacaaaacaagaacacccaaatgagctttcagtaagaatctccttgaaagtttccatttcttcaa 40844436  T
Q  139 aaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccactttccaaaaagatgattgaaagaagagctgctt 238  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  |    
T  40844435 aaataacatcatgctactaatactgaaacttaccaatgtgtaaataatgattttgatgaagttccactttccataaagatggttgaaagaagagctgaat 40844336  T
Q  239 gcataagaaatgaatccgataatacttgnnnnnnntccaaaaattctccattgatttttctgtattagtctattggaaattcttatgggcatagt----- 333  Q
    ||||||||| ||||||| || |||||||       ||| || |||||||| |||||| || ||||||||||||||||||||||||||||||||||         
T  40844335 gcataagaagtgaatccaatgatacttgaaaaaaatcctaatattctccagtgatttatcagtattagtctattggaaattcttatgggcatagtactta 40844236  T
Q  334 -tttttaaagg---gtagtgcgttaatttctatttggattctaagactgatatgttttccttagagtcagagaggggttagaggtaggcaaaaatgcata 429  Q
     ||| | ||||   || ||| |||| ||| ||||||||||||||||||| |||||||||||| | || ||||| ||||| |||||||  | |||| ||||    
T  40844235 atttcttaagggcagtggtgtgttattttgtatttggattctaagactgttatgttttcctt-gtgttagagaagggtttgaggtagaaacaaattcata 40844137  T
Q  430 atcaagtgaacgaaaattat 449  Q
    || |||| ||  ||||||||    
T  40844136 attaagtcaattaaaattat 40844117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 31461456 - 31461311
Alignment:
Q  107 aagaatctctttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccac 205  Q
    ||||||||| |||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||| | ||| ||||||||||||    
T  31461456 aagaatctccttgaaagtttcccttttattcaaaagtaacatcatgcgactgatactgaaacttacca--gtgtaaataatcaattttatgaagttccac 31461359  T
Q  206 tttccaaaaagatgattgaaagaagagctgcttgcataagaaatgaat 253  Q
    |||||||||||||  ||||||||||| |||  |||||||||| |||||    
T  31461358 tttccaaaaagatagttgaaagaagaactgaatgcataagaagtgaat 31461311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 31388785 - 31388646
Alignment:
Q  107 aagaatctctttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccac 205  Q
    ||||| ||| |||||| ||||| |||| ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||| | ||| ||||||||||||    
T  31388785 aagaaactccttgaaactttcccttttattcaaaagtaacatcatgcgactgatactgaaacttacca--gtgtaaataatcaattttatgaagttccac 31388688  T
Q  206 tttccaaaaagatgattgaaagaagagctgcttgcataagaa 247  Q
    |||||||||||||  |||||||||||||||  ||||||||||    
T  31388687 tttccaaaaagatagttgaaagaagagctgaatgcataagaa 31388646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 297
Target Start/End: Complemental strand, 31477159 - 31477045
Alignment:
Q  183 taatgattttgatgaagttccactttccaaaaagatgattgaaagaagagctgcttgcataagaaatgaatccgataatacttgnnnnnnntccaaaaat 282  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||| |||||||| |||||||       |||  ||||    
T  31477159 taatgattttgatgaagttccactttcgaaaaagatgattaaaagaagagctacttacataagaaatcaatccgatgatacttgaaaaaaatcctcaaat 31477060  T
Q  283 tctccattgattttt 297  Q
    |||||||||||||||    
T  31477059 tctccattgattttt 31477045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 31372553 - 31372702
Alignment:
Q  117 ttgaaagtttccatttttt-caaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccactttccaaaaa 215  Q
    |||||| |||||||||||| |||   ||| || |||||| ||||| ||||||| || ||| ||||||||||| ||||||||||||| || |||||| |||    
T  31372553 ttgaaaatttccatttttttcaatgttaagattatgctattgatagtgaaactcacaactatgtaaataatg-ttttgatgaagttgcagtttccataaa 31372651  T
Q  216 gatgattgaaagaagagctgcttgcataagaaatgaatccgataatacttg 266  Q
    |  | ||||||||||||||   |||||||||||||| ||| || |||||||    
T  31372652 gccggttgaaagaagagcttaatgcataagaaatgagtccaatgatacttg 31372702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 31388235 - 31388169
Alignment:
Q  492 gttgaatttgtattgcaaataagacttggacagttgtccttgaaaagtagtagttagtaattggacc 558  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||| | ||||||||    
T  31388235 gttgaatttctattgcaaataagacttagacagttgtccttgaagattagtagttaatgattggacc 31388169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 31325122 - 31325271
Alignment:
Q  117 ttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccactttccaaaaa 215  Q
    |||||| |||||||||| |||||   ||| || |||||| ||||| |||||||  | ||| ||||||||||| ||||||||||||| || |||||| |||    
T  31325122 ttgaaaatttccattttattcaatgttaagattatgctattgatagtgaaactcgcaactatgtaaataatg-ttttgatgaagttgcagtttccataaa 31325220  T
Q  216 gatgattgaaagaagagctgcttgcataagaaatgaatccgataatacttg 266  Q
    |  | ||||||||||||||   |||||||||||||| ||| || |||||||    
T  31325221 gccggttgaaagaagagcttaatgcataagaaatgagtccaatgatacttg 31325271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 31460842 - 31460776
Alignment:
Q  492 gttgaatttgtattgcaaataagacttggacagttgtccttgaaaagtagtagttagtaattggacc 558  Q
    ||||||| | ||||||||| ||||||| |||||||||||||||| || |||||||| | ||||||||    
T  31460842 gttgaatatctattgcaaacaagacttagacagttgtccttgaagagcagtagttaatgattggacc 31460776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 40844076 - 40844022
Alignment:
Q  481 tgacaatatacgttgaatttgtattgcaaataagacttggacagttgtccttgaa 535  Q
    |||||| ||| ||||  ||| |||||||||||||||||||||||||||| |||||    
T  40844076 tgacaagatatgttgtctttctattgcaaataagacttggacagttgtcattgaa 40844022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 31476357 - 31476312
Alignment:
Q  336 tttaaagggtagtgcgttaatttc-tatttggattctaagactgat 380  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||    
T  31476357 tttaaagggtagtgtgttaattttgtatttggattctaagactgat 31476312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 140185 - 140272
Alignment:
Q  1 agaaatcatgctcaataggtctggt-ttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaaca 88  Q
    ||||||||  ||||| ||||||||| |||| |||| |||||||||  || |||||||||||||| ||||| ||||||||||||||||||    
T  140185 agaaatcagactcaagaggtctggtgttttagttcaaagctttattagatacaaaagagtacaa-gatgttagcaacaaaacaagaaca 140272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 148206 - 148293
Alignment:
Q  1 agaaatcatgctcaataggtctggt-ttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaaca 88  Q
    ||||||||  ||||| ||||||||| |||| |||| |||||||||  || |||||||||||||| ||||| ||||||||||||||||||    
T  148206 agaaatcagactcaagaggtctggtgttttagttcaaagctttattagatacaaaagagtacaa-gatgttagcaacaaaacaagaaca 148293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 8038681 - 8038795
Alignment:
Q  210 caaaaagatgattgaaagaagagctgcttgcataagaaatgaatccgataatacttg--nnnnnnntccaaaaattctccattgatttttctgtattagt 307  Q
    ||||||||||| | |||||||||||   |||||||||||||||||| || |||||||         ||| ||||||||| || | ||||||| |||||||    
T  8038681 caaaaagatgagtaaaagaagagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttctttattagt 8038780  T
Q  308 ctattggaaattctt 322  Q
    |||||||||||||||    
T  8038781 ctattggaaattctt 8038795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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