View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_15 (Length: 534)

Name: NF15254_low_15
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_15
NF15254_low_15
[»] chr1 (6 HSPs)
chr1 (420-518)||(34726072-34726169)
chr1 (334-420)||(34725898-34725984)
chr1 (13-57)||(20265145-20265189)
chr1 (334-384)||(3739555-3739605)
chr1 (213-251)||(3739691-3739729)
chr1 (213-247)||(34725777-34725811)
[»] scaffold0576 (1 HSPs)
scaffold0576 (13-57)||(4881-4925)
[»] chr8 (1 HSPs)
chr8 (13-57)||(3734430-3734474)
[»] chr7 (1 HSPs)
chr7 (13-57)||(2751621-2751665)
[»] chr6 (1 HSPs)
chr6 (13-57)||(15359897-15359941)
[»] chr2 (2 HSPs)
chr2 (13-57)||(28658977-28659021)
chr2 (213-251)||(4748265-4748303)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 420 - 518
Target Start/End: Original strand, 34726072 - 34726169
Alignment:
Q  420 aaaacaaataaatttgtatacgttacttagtctattatattgtgagagatgagagatgatattatgaatggaaaacagaacaatgaaaattcaaaatag 518  Q
    ||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  34726072 aaaacaaataaagctgtatacattacttagcctattatattgtgagagatgagagatgatattatgaa-ggaaaacaaaacaatgaaaagtcaaaatag 34726169  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 34725898 - 34725984
Alignment:
Q  334 ctactgatcactaaaatccaaactccacctcttaaagttacttacttgtaccatctctaccaaccaaatttgaatattgtaatgcta 420  Q
    ||||| ||||||| ||||||||||||||||||| ||||| ||| ||||||| ||||||||| ||||| |||||||||| ||||||||    
T  34725898 ctactaatcactagaatccaaactccacctcttgaagttgctttcttgtactatctctacccaccaagtttgaatattataatgcta 34725984  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 20265189 - 20265145
Alignment:
Q  13 taggctccaaagtgttttaaagacattcaccacatgatgttctct 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  20265189 taggctccaaggtgttttaaagacattcaccacatgatgttctct 20265145  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 3739605 - 3739555
Alignment:
Q  334 ctactgatcactaaaatccaaactccacctcttaaagttacttacttgtac 384  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||| |||||||    
T  3739605 ctactaatcactagaatccaaactccacctcttaaagttgctttcttgtac 3739555  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 3739729 - 3739691
Alignment:
Q  213 acaccgctaatttaaaaaatacaggacaccgacactgct 251  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  3739729 acaccgctaatttaaaaaacacaagacaccgacactgct 3739691  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 34725777 - 34725811
Alignment:
Q  213 acaccgctaatttaaaaaatacaggacaccgacac 247  Q
    |||||||||||||||||||| ||||||||||||||    
T  34725777 acaccgctaatttaaaaaatgcaggacaccgacac 34725811  T

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Target: scaffold0576 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 4925 - 4881
Alignment:
Q  13 taggctccaaagtgttttaaagacattcaccacatgatgttctct 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  4925 taggctccaaggtgttttaaagacattcaccacatgatgttctct 4881  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 3734474 - 3734430
Alignment:
Q  13 taggctccaaagtgttttaaagacattcaccacatgatgttctct 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  3734474 taggctccaaggtgttttaaagacattcaccacatgatgttctct 3734430  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 2751621 - 2751665
Alignment:
Q  13 taggctccaaagtgttttaaagacattcaccacatgatgttctct 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  2751621 taggctccaaggtgttttaaagacattcaccacatgatgttctct 2751665  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 15359941 - 15359897
Alignment:
Q  13 taggctccaaagtgttttaaagacattcaccacatgatgttctct 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  15359941 taggctccaaggtgttttaaagacattcaccacatgatgttctct 15359897  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 28659021 - 28658977
Alignment:
Q  13 taggctccaaagtgttttaaagacattcaccacatgatgttctct 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  28659021 taggctccaaggtgttttaaagacattcaccacatgatgttctct 28658977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 4748303 - 4748265
Alignment:
Q  213 acaccgctaatttaaaaaatacaggacaccgacactgct 251  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  4748303 acaccgctaatgtaaaaaatataggacaccgacactgct 4748265  T

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