View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_16 (Length: 504)
Name: NF15254_low_16
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 3 - 489
Target Start/End: Original strand, 6063191 - 6063677
Alignment:
| Q |
3 |
gagatcaatcaccggccaaacattactctactctaaacattagtagtacgttgcaattatcttagcttactttggaggatagtctatactctacactaaa |
102 |
Q |
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| T |
6063191 |
gagatcaatcaccggccaaacattactctactctaaacattagtagtacgttgcaattatcttagcttactttggaggatagtctatactctacactaaa |
6063290 |
T |
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| Q |
103 |
ataaaaagcatcaatcactggctatggaaactttctcaaattagcaccaactaaaagacaaagatgtggaaaagaaatgtaaccacctactttacaattt |
202 |
Q |
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| T |
6063291 |
ataaaaagcatcaatcactggctatggaaactttctcaaattagcaccaactaaaagacaaagatgtggaaaagaaatgtaaccaactactttacaattt |
6063390 |
T |
|
| Q |
203 |
agaaagtttgcaacataagaaaaatgtatcctttacatttaccttcataatataaatgtttgttgtctgttttttattagccaaagcaataatctaactt |
302 |
Q |
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| T |
6063391 |
agaaagtttgcaacataagaaaaatgtatcctttacatttaccttcataacataaatgtttgttgtctgttttttattagccaaagcaataatctaactt |
6063490 |
T |
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| Q |
303 |
attattaaatgaatgaattgactaacactacttgaaactcacctatataactgtgagatcccgagtttaaatccaataaaagtgtttaggctaataatat |
402 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||| |
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| T |
6063491 |
attattacatgaatgaattgactaacactacttgaaactcacctatataactgtgagatcctgagtttaaatccaataaaagtgttcagtctaacaatat |
6063590 |
T |
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| Q |
403 |
tggtcctactagttgagctatacattttggacggtgcataaccaaatattttaacagtacaccttatattaataaacacctattcat |
489 |
Q |
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| T |
6063591 |
tgatcctactagttgagctatacattttggacggtgcataaccaaatattttaacagtacaccttatattaataaacacctattcat |
6063677 |
T |
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