View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_low_2 (Length: 737)
Name: NF15254_low_2
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 14 - 630
Target Start/End: Complemental strand, 4596066 - 4595454
Alignment:
| Q |
14 |
cagagattaaagggagaaaaatgattcgaatcataatttatatgataatatctgattcaaatcaaacatgtaaagttgaagatttaaagaatcattttga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4596066 |
cagagattaaagggagaaaaatgattcgaatcataatttatatggtaacatctgattcaaatcaaacatgtaaagttgaagatttaaagaatcattttga |
4595967 |
T |
|
| Q |
114 |
cacaccaacttgttcccatatactttccaattgagtttttatgcagagtaattatttcagaatcatcataagtgcatatggcctagagtgaaagggtact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4595966 |
cacaccaacttgttcccatatactttccaattgagtttttatgcagagtaattatttcagaatcatcataagtgcatatggcctagagtgaaagggtact |
4595867 |
T |
|
| Q |
214 |
ttgcaaatactataagacttcattcaaaacaatctaaaataaactaatcaaccctaaggagaaactttagtttgtcactatttttagataacaatttaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4595866 |
ttgcaaatactataagacttcattcaaaacaatctaaaataaactaattaaccctaaggagaaactttagtttgtcactatttttagataacaatttaaa |
4595767 |
T |
|
| Q |
314 |
ataaacgaactttttagatttgtactattcacatatcatttttatcattatttcatcgatacactcgcttttccccttcctctctcattcttacccagta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4595766 |
ataaacgaactttttagatttgtactattcacatatcatttttatcattatttcatcgatacactcacttttccccttcctctctcattcttacccagta |
4595667 |
T |
|
| Q |
414 |
agacaaaagaaaaaattggtgctataacattttatccatttccatctcgtcctctagcaaatgttccattttgttactcaaattttatttttattccact |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4595666 |
agacaaaagaaaaaattggtgctataacattttatccatttccatctcgtcctctagcaaatgttccattttgttactcaaattttatttttattccact |
4595567 |
T |
|
| Q |
514 |
atttccacgagtaaatattnnnnnnnnnnnnnnnncggtttac-ttttttctctttcacaaaaatgtatttatcacatatacttnnnnnnnnntgtggaa |
612 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4595566 |
atttccacgagtaaatattaaaaaaaaaaaat----ggtttactttttttctctttcacaaaaatgtatttatcacatatactt-aaaaaaaatgtggaa |
4595472 |
T |
|
| Q |
613 |
caaactgttggaattgag |
630 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4595471 |
caaactgttggaattgag |
4595454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 722
Target Start/End: Complemental strand, 4595396 - 4595362
Alignment:
| Q |
688 |
cgtaattaatccatatacatgaactatattttatt |
722 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4595396 |
cgtaattaatccatatacatgaactatattttatt |
4595362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University