View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_20 (Length: 463)
Name: NF15254_low_20
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 111 - 444
Target Start/End: Original strand, 13084841 - 13085176
Alignment:
| Q |
111 |
acaagaagacaccagggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaagcacaaatcaaatccatcttcg |
210 |
Q |
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| T |
13084841 |
acaagaagacaccaaggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaaacacaaatcaaatccatctccg |
13084940 |
T |
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| Q |
211 |
gccaacacacagaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaagtaatgatgtgaatgttgtatggcaaagaaccacttc |
310 |
Q |
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| T |
13084941 |
accaacacaccgaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaagcaatgatgtgaatggtgtatggcaaagaaccacttc |
13085040 |
T |
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| Q |
311 |
cattaatgaaattggattctatccagcagatgctcaacctcaacaagtcttcc--nnnnnnnnnngtaaattatttcggactttccaaatagatcacaca |
408 |
Q |
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| T |
13085041 |
cattaatgaaattggattctatcgagtagatgctcaacctcaacaagtcttccaaaaaaaaaaaagtaaattatttcggactttccaaatagatcacaca |
13085140 |
T |
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| Q |
409 |
gttgaattctagaccaaaaggaaacctagcctatac |
444 |
Q |
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|||| || |||||||||||||||||||||||||||| |
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| T |
13085141 |
gttgcatgctagaccaaaaggaaacctagcctatac |
13085176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 111 - 273
Target Start/End: Original strand, 13013685 - 13013847
Alignment:
| Q |
111 |
acaagaagacaccagggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaagcacaaatcaaatccatcttcg |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13013685 |
acaagaagacaccaaggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaagcacaaatcaaatccatctcca |
13013784 |
T |
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| Q |
211 |
gccaacacacagaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaa |
273 |
Q |
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||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13013785 |
accaacacaccgaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaa |
13013847 |
T |
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