View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_low_24 (Length: 433)
Name: NF15254_low_24
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 293 - 426
Target Start/End: Original strand, 17115523 - 17115656
Alignment:
| Q |
293 |
atctttgttcgaatacatatgatctaattaacaccagatcaataaactagaagtgaatccaaaatgcctataatatgtagttttacttgtgttaatcatt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
17115523 |
atctttgttcgaatacatatgatctaattaacaccagatcaataaactagaatttaatccaaaatgtgtatattatgtagttttacttgtgttaatcatt |
17115622 |
T |
|
| Q |
393 |
ttccaaaataagttgtatcaatcatattcatatc |
426 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
17115623 |
tttcaaaataagttgtatcaatcatattcatatc |
17115656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 17115148 - 17115227
Alignment:
| Q |
18 |
tttgtaagagtaacaagtgcgataaataaactggcgacaacacgtcaactgaatccaaagccttagacgtagacacagaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17115148 |
tttgtaagagtaacaagtgcgataaataaactggcgacaacacatcaactgaatccaaagccttagatgtagacacagaa |
17115227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 17115450 - 17115494
Alignment:
| Q |
251 |
taatatcatcggagtgttacctccgccatgagctatcatagcatc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17115450 |
taatatcatcggagtgttacctccgccatgagctatcatagcatc |
17115494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University