View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_25 (Length: 419)

Name: NF15254_low_25
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_25
NF15254_low_25
[»] chr3 (3 HSPs)
chr3 (1-406)||(24690793-24691198)
chr3 (72-204)||(24639666-24639798)
chr3 (11-148)||(24646702-24646839)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 24691198 - 24690793
Alignment:
Q  1 agtgaatctgtgtgacttgcgaatcagttactcttcaatagattctaagctcggagattttagtattaagttaaataattgtctcatattcattgatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24691198 agtgaatctgtgtgacttgcgaatcagttactcttcaatagattctaagctcgtagattttagtattaagctaaataattgtctcatattcattgatctt 24691099  T
Q  101 tccttctatcaagataaacaagtctctttctacttctgataactttagattcatggctatacgtatttccttctaaaaagataaaactaaatattcgaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24691098 tccttctatcaagataaacaagtctctttctacttctgataactttagattcatggttatacgtatttccttctaaaaagataaaactaaatattcgaga 24690999  T
Q  201 tgggactctttatgaatggctatattgacagcaaacagggtcnnnnnnnggctgtttctccttctaaagcttcacatattttaattaggaccttttattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24690998 tgggactctttatgaatggctatattgacagcaaacagggtctttttttggctgtttctccttctaaagcttcacatattttaattaggaccttttattc 24690899  T
Q  301 tcacacaataaatcaaacaggattattgaatttctgaattgaattagttttgaatgtcaagttgatattttatatccattatacaatcactctcaacatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24690898 tcacacaataaatcaaacaggattattgaatttctgaattgaattagttttgaatgtcaagttgatattttatatccattatacaatcactctcaacatt 24690799  T
Q  401 gaccat 406  Q
    ||||||    
T  24690798 gaccat 24690793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 24639798 - 24639666
Alignment:
Q  72 taaataattgtctcatattcattgatctttccttctatcaagataaacaagtctctttctacttctgataactttagattcatggctatacgtatttcct 171  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| ||  ||||||||| |||| |||||| || |||||  ||||  ||||||||    
T  24639798 taaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaactttggactcatgcttatagatatttcct 24639699  T
Q  172 tctaaaaagataaaactaaatattcgagatggg 204  Q
    |||| |||||||||  |||||||| ||| ||||    
T  24639698 tctataaagataaagttaaatattggagctggg 24639666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 24646839 - 24646702
Alignment:
Q  11 tgtgacttgcgaatcagttactcttcaatagattctaagctcggagattttagtattaagttaaataattgtctcatattcattgatctttccttctatc 110  Q
    |||||||| | ||||||||| ||||| |||||||||||| ||   | |||||| || |||  || |||||| ||||| || |  ||||||||||||| |     
T  24646839 tgtgacttactaatcagttattcttctatagattctaagttcatggtttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgta 24646740  T
Q  111 aagataaacaagtctctttctacttctgataactttag 148  Q
    |||||||||  |||||| ||| || |||| ||||||||    
T  24646739 aagataaacctgtctctctctgctgctgagaactttag 24646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University