View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_low_26 (Length: 416)
Name: NF15254_low_26
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 49034663 - 49034279
Alignment:
| Q |
12 |
atcatcataaatggatgttattatactggattatttgaacatgaagaagatcttttactaatttgtcaataatataggaggttacctttctagactcgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49034663 |
atcatcataaatggatgttattatactggattatttgaacatgaagaagatcttttactaatttgtcaataatataggaggttacctttctagactcgtt |
49034564 |
T |
|
| Q |
112 |
tacttcaatattggagcaaccagacacacaacactttccccatccacgagctacaacagcagcatgagatgtcataccacctctagctgtcaagatgcca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49034563 |
tacttcaatattggagcaaccagacacacaacactttccccatccacgagctacaacagcagcatgagatgtcataccacctctagctgtcaagatgcca |
49034464 |
T |
|
| Q |
212 |
acagctgaatgcattcccccaatgtcctctggacttgtttctgtccttaccttcaataatgcaagtatgtattagaattcaatgattgcttatggattat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49034463 |
gcagctgaatgcattcccccaatgtcctctggacttgtctctgtccttaccttcaataatgcaagtatgtattagaattcaatgattgcttatggattat |
49034364 |
T |
|
| Q |
312 |
ttctttaaccaagatatgaaactaaatctaggacattatatagagatactttatacacactggtttgatctctatgatgggctaa |
396 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49034363 |
ttctttaacctagatatgaaactaaatctaggacattatatagagatactttatacacactggtttgatctctatgatgggctaa |
49034279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University