View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_27 (Length: 413)
Name: NF15254_low_27
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 49276413 - 49276784
Alignment:
| Q |
18 |
aatcttttcctgatttggatgaacattagatatagctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattca |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49276413 |
aatcttttcctgatttggaggaacattagatatagctctctcataaacctccctagttttttccttatcccctacactttcttccaatcgtatatattca |
49276512 |
T |
|
| Q |
118 |
aaccaggaatcatagttgaaaggattttccctcacttcgttttcaaataccacaatcttgcatgagtaatttaatagcgtgtggtttaagtaatcaactt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49276513 |
aaccaggaatcatagttgaaaggattttccctcacttcgttttcaaataccacaatcttgcatgagtaatttaatagcgtgtggtttaagtcatcaactt |
49276612 |
T |
|
| Q |
218 |
cagaaacggaacgtgggcatttttgtttcggagtgcagattttggtctcttggagttccttagcttcgataagaatcttctcagtcgtgatttgaattgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49276613 |
cagaaacggaacgtgggcatttttgtttcggagtgcagattttggtctcttggagttccttagcttcgataagaatcttctcagttgtgatttgaattgg |
49276712 |
T |
|
| Q |
318 |
agcatcggttttgttcttctccattgttggtcgaggaagcttccaccgtgtgtcttctctagggaaataact |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49276713 |
agcatcggttttgttcttctccattgttggtcgaggaagcttccactgtgtgtcttctctagggaaataact |
49276784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 49279970 - 49280172
Alignment:
| Q |
18 |
aatcttttcctgatttggatgaacattagatatagctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattca |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
49279970 |
aatcttttcctgatttggaggaacattagatatagctctctcataaacctccctagttttttcctcatcccccacactttcttccaatcgtatatagctt |
49280069 |
T |
|
| Q |
118 |
aaccaggaatcatagttgaaaggattttccctcacttcgttttcaaataccacaatcttgcatgagtaatttaatagcgtgtggtttaagtaatcaactt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
49280070 |
aaccaggaatcatagttgaaaggattttccctcgcttctttttcaaatgccacaatcttgcatgggtaatttaatagcgtgtggttcaagtaatcaactt |
49280169 |
T |
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| Q |
218 |
cag |
220 |
Q |
| |
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||| |
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|
| T |
49280170 |
cag |
49280172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 49280186 - 49280274
Alignment:
| Q |
267 |
ttggagttccttagcttcgataagaatcttctcagtcgtgatttgaattggagcatcggttttgttcttctccattgttggtcgaggaa |
355 |
Q |
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||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| || ||||||||||||||| |
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| T |
49280186 |
ttggagttccttatcttcgataagaatcagctcagttgtgatttgaattggtgcatcggttttgttgttcaccgttgttggtcgaggaa |
49280274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 2597811 - 2597927
Alignment:
| Q |
38 |
gaacattagatatagctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaa |
137 |
Q |
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||||||||| |||||||||||||||||||||| ||||| ||| ||||| ||| ||||| |||| | ||| |||||| |||||||| ||||||| || || |
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| T |
2597811 |
gaacattagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatataatcaaacca-taatcataattcaa |
2597909 |
T |
|
| Q |
138 |
aggattttccctcacttc |
155 |
Q |
| |
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|||||| ||||||||| |
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| T |
2597910 |
cagatttttcctcacttc |
2597927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 2292659 - 2292776
Alignment:
| Q |
38 |
gaacattagatatagctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaa |
137 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| ||| ||||| ||| ||||| |||||||||| |||||| |||||||| |||||||| || || |
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| T |
2292659 |
gaacattggctatagctctctcataaacctccctagttctttccttattcccaacactctcttccaatcttatataatcaaaccatgaatcataattcaa |
2292758 |
T |
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| Q |
138 |
aggattttccctcacttc |
155 |
Q |
| |
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||||||| ||||||||| |
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| T |
2292759 |
cggatttttcctcacttc |
2292776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 34788533 - 34788428
Alignment:
| Q |
40 |
acattagatatagctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaag |
139 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||| ||||| ||| ||||| |||||||||| |||||| |||||||| ||||||| || || | |
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| T |
34788533 |
acattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacaaatcataattcaatg |
34788434 |
T |
|
| Q |
140 |
gatttt |
145 |
Q |
| |
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|||||| |
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| T |
34788433 |
gatttt |
34788428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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