View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_low_28 (Length: 407)
Name: NF15254_low_28
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 145 - 388
Target Start/End: Complemental strand, 21307578 - 21307339
Alignment:
| Q |
145 |
atatttcgctttcacttatgttcggtgtgttttaacttgatatagtgcccaaattattggtgtcttaatttgttaagaaccacactataaatattaagca |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| | ||| |||||||| ||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
21307578 |
atatttcgctttcacttatgttcggtatgttctaacttgatatggggcc-aaattatttgtgtctt----tgttaacaagaacactataaatattaagca |
21307484 |
T |
|
| Q |
245 |
tattaaattaatgaaa-catcataaaacaaatctatcttgtacacatatacatcttaaaaacaacttgtaatcaaaatggttgttgtaggtggaattttg |
343 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
21307483 |
tattaaattcatcaaatcatcataaaacaaatctatcttgaacacatatacatcttaaaaacaactagaaatcaaaatggttgttgtaggtggaattttg |
21307384 |
T |
|
| Q |
344 |
aagctcaagaataatgtcttcaaaaagctccaaaaaaccctatta |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21307383 |
aagctcaagaataatgtcttcaaaaagctccaaaaaaccctatta |
21307339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 78 - 390
Target Start/End: Complemental strand, 21298222 - 21297918
Alignment:
| Q |
78 |
aaaatgttcgttcgaaaacattgcaccgatgacatacatgaattgctatattatgaactccaa-ttcgatatttcgctttcacttatgttcggtgtgttt |
176 |
Q |
| |
|
||||| || ||||||||||| || ||||| |||||||||||||||||||||||||||| ||| ||| ||||| || ||||||||||| | || |
|
|
| T |
21298222 |
aaaatattggttcgaaaacactgtaccgaacacatacatgaattgctatattatgaactgcaaattcagtattta---tt---ttatgttcggtatattc |
21298129 |
T |
|
| Q |
177 |
taacttgatatagtgcccaaattattggtgtcttaatttgttaagaaccacactataaatattaagcatattaaattaatgaaa-catcataaaacaaat |
275 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||||| ||||||||| |||||||||||||| |||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
21298128 |
taactttatatagtgcccaaataattagtgtctt----tgttaagaagcacactataaatataaagcatattaaattgatcaaatcatcataaaacaaat |
21298033 |
T |
|
| Q |
276 |
ctatcttgtacacatatacatcttaaaaacaacttgtaatcaaaatggttgttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctcca |
375 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21298032 |
ctatcttgaacacatatacatcttaaaaacaactagaaatcaaaatggttgttgtaggtggaattttgaagctcaagaataatgtcttcattaagctcca |
21297933 |
T |
|
| Q |
376 |
aaaaaccctattaat |
390 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21297932 |
caaaaccctattaat |
21297918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 21307625 - 21307574
Alignment:
| Q |
78 |
aaaatgttcgttcgaaaacattgcaccgatgacatacatgaattgctatatt |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
21307625 |
aaaatgttcgttcgaaaacagtgcaccgatcacatacatgaattgctatatt |
21307574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University