View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_3 (Length: 723)
Name: NF15254_low_3
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 230 - 706
Target Start/End: Complemental strand, 29194075 - 29193599
Alignment:
| Q |
230 |
gttatgtcatttcatacttcctgaactctgcatatccgggagctttcgttcgcctggctgcccnnnnnnnnnnngttgtcatttcatacttatcaactaa |
329 |
Q |
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| T |
29194075 |
gttatgtcatttcatacttcctgaagtctgcatatctgggagctttagtttgcctggctgccctttttttttttgttgtcatttcatatttatcaactag |
29193976 |
T |
|
| Q |
330 |
tttcaatcgtaaattttagcaaatactacaagttcaatatgctaaactatccattattcgttgtaagttgatccgcaatcagctagtttctcagctatca |
429 |
Q |
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| T |
29193975 |
tttcaatcgtaaaatttagcaaatactacaagttcaatatgctaaactagccattattcgttgtaagttgatccgcaatcagctagtttctcagctatca |
29193876 |
T |
|
| Q |
430 |
atggccttttaccaacgagaggctaagtcaatccaatcatactcttnnnnnnntacacgaagcagatagcaaaagttaagattgaaatcacacgaattca |
529 |
Q |
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| T |
29193875 |
atggccttttaccaacaagaggctaagtcaatccaatcatactcttaaaaaaatacacgaagcagatagcaaaagttaagattgaaatcacacgaattca |
29193776 |
T |
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| Q |
530 |
cctttcaacgcagtttccaatgaattaacatcatcaatatcaacacgcgcgaaacctgaattcccgccaagtttggcaacaagagcttcacctttctctc |
629 |
Q |
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| T |
29193775 |
cctttcaacgctgtttccaatgaattaacatcatcaatatcaacacgcgcgaatcctgaattcccgccaagtttggcaacaagagcttcacctttctctc |
29193676 |
T |
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| Q |
630 |
tgttacatcattacactattacaatttatcacatctaacagtgttagaagcaacttgtatatatgtgcgttacactt |
706 |
Q |
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| T |
29193675 |
tgttacatcattacactattacaatttatcacatctaacagtgttagaagcaacttgtatatatgtgcgttaaactt |
29193599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 29194299 - 29194172
Alignment:
| Q |
6 |
gtagattatacttataaccttataggaccgaaataaacctgtttggtnnnnnnnnntctcatgagcttataacgttttttaactagctaatagcattttc |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29194299 |
gtagtttatacttataaccttataggaccgaaataaacctgtttggtaaaaaaaaatctcatgagcttataacgttttttaactagcttatagcattttc |
29194200 |
T |
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| Q |
106 |
tgagaagttgcttcaagtagtgtttgag |
133 |
Q |
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| T |
29194199 |
tgagaagttgcttcaagtagtgtttgag |
29194172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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