View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_31 (Length: 401)
Name: NF15254_low_31
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 17869931 - 17870300
Alignment:
| Q |
18 |
cttgtaactaatttcatttgatcaattagttgatagaatagataaattaattagaagtgcatttggttgtttatgcatgtttagtttgaagactcaccaa |
117 |
Q |
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| T |
17869931 |
cttgtaactaatttcatttgctcaattagttgatagaatagataaattaattagaagtgcatttggttgtttatgcatgtttagtttgaagactcaccaa |
17870030 |
T |
|
| Q |
118 |
agagtaataagcaccaaaaggtcctttatccaataatgctttgtgagttccaatttcaaccattttccctttttctaaaacagcaataacatcacaattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17870031 |
agagtaataagcaccaaaaggtcctttatccaataatgctttgtgagttccaatttcaaccattttccctttttctaaaacagcaataacatcacaattg |
17870130 |
T |
|
| Q |
218 |
tgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcactaccttctctgaattattatccagtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
17870131 |
tgtatggtactcaacctatgtgctacaaccacactagtccttccaaccattaccttattcaatgcatcttgcactaccttttctgaattattatcaagtg |
17870230 |
T |
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| Q |
318 |
cacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17870231 |
cacttgttgcttcatctagaagcaacacctttggattcttcaacatggctctagctattgctatcctttg |
17870300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 194 - 390
Target Start/End: Complemental strand, 2451350 - 2451154
Alignment:
| Q |
194 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcacta |
293 |
Q |
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| T |
2451350 |
aaaacaacaatcatatcacaattttgtatagtactcaacctatgagccacaaccacacttgttcttccaatcataaccctttctaaagcatcttgcacta |
2451251 |
T |
|
| Q |
294 |
ccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttgctt |
390 |
Q |
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| T |
2451250 |
acttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctttggattcttcaatatagctctagctattgcaatcctttgctt |
2451154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 387
Target Start/End: Original strand, 2640911 - 2641104
Alignment:
| Q |
194 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcacta |
293 |
Q |
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||||||||||| | ||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||| ||| || | | || ||||||||||||| |
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| T |
2640911 |
aaaacagcaatcaaatcacaattttgtatagtactcaacctatgtgcgacaactacacttgtccttccaaccataactctttctaaagcatcttgcacta |
2641010 |
T |
|
| Q |
294 |
ccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
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|||||||| | | |||| |||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2641011 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagtaacacctttggattcttcaatatagctctagctattgcaatcctttg |
2641104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 191 - 387
Target Start/End: Original strand, 2672068 - 2672264
Alignment:
| Q |
191 |
tctaaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgca |
290 |
Q |
| |
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|||||||||||||| | ||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || |||||||| | |
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| T |
2672068 |
tctaaaacagcaatcaaatcgcaattttgtatagtactcaacctatgtgctacaaccacacttgtccttccaaccataaccctttctaaagcatcttgga |
2672167 |
T |
|
| Q |
291 |
ctaccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
| |
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||| ||||| || | | |||| |||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| || ||||| |
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| T |
2672168 |
ctaatttctcagattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttg |
2672264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 387
Target Start/End: Complemental strand, 2440628 - 2440435
Alignment:
| Q |
194 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcacta |
293 |
Q |
| |
|
||||||||||| | |||||| || || || |||||||||||||||||||||||||| || |||||||||| ||| ||||| | || |||||||| |||| |
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| T |
2440628 |
aaaacagcaatcaaatcacagttttgaatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagcatcttggacta |
2440529 |
T |
|
| Q |
294 |
ccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
| |
|
|||||||| | | |||| |||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| || ||||| |
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|
| T |
2440528 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttg |
2440435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 387
Target Start/End: Original strand, 2568696 - 2568889
Alignment:
| Q |
194 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcacta |
293 |
Q |
| |
|
||||||||||| | ||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| ||| ||| | | || |||||||| |||| |
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| T |
2568696 |
aaaacagcaatcaaatcacaattttgtatagtactcaacctatgtgccacaaccacacttgtccttccaaccataaccctttctaaagcatcttggacta |
2568795 |
T |
|
| Q |
294 |
ccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
| |
|
||||| || | | |||| |||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| || ||||| |
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| T |
2568796 |
atttctcagattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttg |
2568889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 387
Target Start/End: Complemental strand, 2592574 - 2592381
Alignment:
| Q |
194 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcacta |
293 |
Q |
| |
|
||||||||||| | |||||| || || || |||||||||||||||||||||||||| || |||||||||| ||| ||||| | || |||||||| |||| |
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| T |
2592574 |
aaaacagcaatcaaatcacagttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagcatcttggacta |
2592475 |
T |
|
| Q |
294 |
ccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
| |
|
|||||||| | | |||| |||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| || ||||| |
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| T |
2592474 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttg |
2592381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 387
Target Start/End: Original strand, 2596258 - 2596448
Alignment:
| Q |
197 |
acagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcactacct |
296 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| ||| ||| | | || | |||||| |||| | |
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|
| T |
2596258 |
acagcaatcaaatcacaattttgtatagtactcaacctatgtgccacaaccacacttgtccttccaaccataaccctttctaaagtatcttggactaatt |
2596357 |
T |
|
| Q |
297 |
tctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
| |
|
||||||| | | |||| |||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| || ||||| |
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|
| T |
2596358 |
tctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttg |
2596448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 194 - 387
Target Start/End: Complemental strand, 2624118 - 2623925
Alignment:
| Q |
194 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccacactagtccttccaatcattaccttattcaatgcatcttgcacta |
293 |
Q |
| |
|
||||||||||| | |||||| || || || |||||||||||||||||||||||||| || |||||||||| ||| ||||| | || | ||||| |||| |
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|
| T |
2624118 |
aaaacagcaatcaaatcacagttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttggacta |
2624019 |
T |
|
| Q |
294 |
ccttctctgaattattatccagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatagctctagctattgctatcctttg |
387 |
Q |
| |
|
||||| || | | |||| |||||||||||||||||||| | ||||||||| | ||||||||| || ||||||||||||||||| || ||||| |
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|
| T |
2624018 |
atttctcagattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttg |
2623925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 3431209 - 3431253
Alignment:
| Q |
346 |
ctttggattcttcaacatagctctagctattgctatcctttgctt |
390 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| ||||||||||| |
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|
| T |
3431209 |
ctttggatttttcaacatagctcttgcaattgcaatcctttgctt |
3431253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 39157765 - 39157722
Alignment:
| Q |
349 |
tggattcttcaacatagctctagctattgctatcctttgcttct |
392 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39157765 |
tggattcttcaacattgctctagctattgctatcctttgcttct |
39157722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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