View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_32 (Length: 399)
Name: NF15254_low_32
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 10219958 - 10219593
Alignment:
| Q |
16 |
atgaacaagaaaagtaatgaatgataccatgtaatatttataagtagcagcagggtaattccgaatataaaagcgatgaacatcagtaggaggaaacaaa |
115 |
Q |
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| T |
10219958 |
atgaacaagaaaagtaatgaatcataccatgtaatatttataagtagcagcagggtaattccgaatataaaagcgatgaacatcagtaggaggaaacaaa |
10219859 |
T |
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| Q |
116 |
agaaagtgtttttgaccagtaacaacagcataaagattctcataatgatccttatgaaaccaagtagatgaatgtttgttcccaatccaaagattaacag |
215 |
Q |
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| T |
10219858 |
agaaagtgtttttgaccagtaacaacagcataaagattctcataatgatccttatgaaaccaagtagatgaatgtttgtttccaatccaaagattaacag |
10219759 |
T |
|
| Q |
216 |
cttcaggctctaaaccaaatgcttcagtagcccaagcaatatgttgatcacaatctttaacaatggaatcatactctgaacgaaaacaatcgttctgttc |
315 |
Q |
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| T |
10219758 |
cttcaggctctaaaccaaatgcttcagtagcccaagcaatatgttgatcacaatctttaacaatggaatcatactctgaacgaaaacaatcgttctgttg |
10219659 |
T |
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| Q |
316 |
ctgcgcgtaggcgacacattgggaagggttagaggagttgatgagacggagggcttcggggaaagg |
381 |
Q |
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| T |
10219658 |
ctgcgcgtaggcgacacattgggaagggttagaggagttgatgagacggagggcttcggggaaagg |
10219593 |
T |
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