View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_33 (Length: 396)
Name: NF15254_low_33
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 15754595 - 15754228
Alignment:
| Q |
11 |
aagaataagtaaacaaatgaagcattaatggtcaaaacttataaggttaataacaaaatcttcattttagttttagaaatatatgcattattgatcatac |
110 |
Q |
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| T |
15754595 |
aagaataagtaaacaaatgaagcattaatggtcaaaacttataaggttaataacaaaatcttcattttagttttagaaatatatgcattattgatcatac |
15754496 |
T |
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| Q |
111 |
ctgactctgaacatacatagcaacctgagagctatctcctgtcagcatgactgatctgactcctaataactttagctcttccattgcctctaaagcacct |
210 |
Q |
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| T |
15754495 |
ctgactctgaacatacatagcaacctgagagctatctcctgtcagcatgactgatctgactcctaataactttagctcttccattgcctctaaagcacct |
15754396 |
T |
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| Q |
211 |
gatctacaagcatcaactaggctgaaaactccaactagagtttcttcgcagttatttttcttggtagaaatctcaggtctttgaaattgtactgcgcagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15754395 |
gatctacaagcatcaactaggctgaaaactccaactagagtttcttcacagttatttttcttggtagaaatctcaggtctttgaaattgtacttcgcagt |
15754296 |
T |
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| Q |
311 |
tatctataaatataatagtagaatttaattatagatcataaactatcaaattcaatgataaacatata |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15754295 |
tatctataaatataatagtagaatttaattatagatcataaactatcaaattcaatgatcaacatata |
15754228 |
T |
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