View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_34 (Length: 386)
Name: NF15254_low_34
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 6215187 - 6214806
Alignment:
| Q |
16 |
aatattgacgtttacaacatatatgccccagtttgtaattcatctgcaacaaaatatggtgctagttactctgtaagttgcattctattttgtatttata |
115 |
Q |
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| T |
6215187 |
aatattgacgtttacaacatatatgccccagtttgtaattcatctgcaacaaaatatggtgctagttactctgtaagttgcattctattttgtatttata |
6215088 |
T |
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| Q |
116 |
gtatgcgaaatcggaaccagctcgagtagagtagtctgcttagat----------------------ggttgatgaacctataacaaataacggatagac |
193 |
Q |
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| T |
6215087 |
gtatgcgaaatcggaaccagctcgagtagagtagtctgcttagattctgtctgataagttagctgatggttgatgaacctataacaaataacggatagac |
6214988 |
T |
|
| Q |
194 |
tatctgattaaatttaaagtgttggataaaaataaacaataaagtttactgaatagtgaatataagaaattaattacaaaattcttcttaaatgaaattt |
293 |
Q |
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| T |
6214987 |
tatctgattaaatttaaagtgttggataaaattaaacaataaagtttactgaatagtgaatataagaaattaattacaaaattcttcttaaatgaaattt |
6214888 |
T |
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| Q |
294 |
gcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcat |
375 |
Q |
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| T |
6214887 |
gcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcat |
6214806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 6207518 - 6207378
Alignment:
| Q |
17 |
atattgacgtttacaacatatatgccccagtttgtaattcatctgcaacaaaatatggtgctagttactctgtaagttgcattctattttgtatttatag |
116 |
Q |
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| T |
6207518 |
atattgacgtttacaacatatatgccccagtttgtaattcatctgcaacaaaaaatggagctagttactttgtaagttacattcttttttgtatatatgg |
6207419 |
T |
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| Q |
117 |
tatgcgaaatcggaaccagctcgagtagagtagtctgctta |
157 |
Q |
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| T |
6207418 |
tatgcaaaatcggaactagctcgagtagattagtctgctta |
6207378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 6207257 - 6207146
Alignment:
| Q |
263 |
ttaattacaaaattcttcttaaatgaaatttgcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttca |
362 |
Q |
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| T |
6207257 |
ttaattacaaaat-cttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttca |
6207159 |
T |
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| Q |
363 |
aaaggctcttcat |
375 |
Q |
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| T |
6207158 |
aaaggctcttcat |
6207146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6177616 - 6177563
Alignment:
| Q |
16 |
aatattgacgtttacaacatatatgccccagtttgtaattcatctgcaacaaaa |
69 |
Q |
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| T |
6177616 |
aatattgacatttacaacatatatgccccattttgtaattcatctgcaacaaaa |
6177563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 6207340 - 6207293
Alignment:
| Q |
158 |
gatggttgatgaacctataacaaataacggatagactatctgattaaa |
205 |
Q |
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| T |
6207340 |
gatggtagatgaatctatagcaaataacggatagactatctgattaaa |
6207293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 375
Target Start/End: Complemental strand, 6177463 - 6177336
Alignment:
| Q |
255 |
ataagaaattaattacaaaattcttcttaaatgaaat-------ttgcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaa |
347 |
Q |
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|||||||||||||| |||||| ||||||||||||||| ||||||| ||| || | ||||||||| ||||||||||||| | | | |||||||| |
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| T |
6177463 |
ataagaaattaattgcaaaatgcttcttaaatgaaatatcaacattgcagggtagtgattttgacccttgttctgaagattatactaatgcttatttaaa |
6177364 |
T |
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| Q |
348 |
tctcccagaagttcaaaaggctcttcat |
375 |
Q |
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|| || |||||||| ||||||||||| |
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| T |
6177363 |
cctacctaaagttcaagaggctcttcat |
6177336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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