View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_36 (Length: 377)
Name: NF15254_low_36
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 3527838 - 3527491
Alignment:
| Q |
13 |
cagagagaaagaaaccattgactatactctagggatataaagagtcacctcgttgattaatatagtcaaatgcaatgaaaataaacctttccagtgaggc |
112 |
Q |
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| T |
3527838 |
cagagagaaagaaaccattgactatactctagggatataaagagtcacctcgttgattaatatagtcaaatgcaatgaaaataaacctttccagtgaggc |
3527739 |
T |
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| Q |
113 |
aatggaaactatatgtatattaaaccaaaatagaactcaaataaatagttagaaagaaagnnnnnnnnttaaaccaaagcaacctatatagtnnnnnnnn |
212 |
Q |
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| T |
3527738 |
aatggaaactatatgtatattaaaccaaaatagaactcaaataaatagttagaa--aaagaaaaaaaattaaaccaaagcaacctatatagtacacacac |
3527641 |
T |
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| Q |
213 |
nnnnnttttttcacgtaggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatgaatagtggcaaaatgtgtacacgggtgatg |
312 |
Q |
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| T |
3527640 |
acacattttttcacgtaggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatgaataatggcaaaatgtgtacacgggtgatg |
3527541 |
T |
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| Q |
313 |
ctgatttgggtgttaatggtagtaattagcatgagtgtaatcagcttagt |
362 |
Q |
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| T |
3527540 |
ctgatttgggtgttaatggtagtaattagcatgagtgtaattagcttagt |
3527491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 3532016 - 3531963
Alignment:
| Q |
228 |
taggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatg |
282 |
Q |
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| T |
3532016 |
taggaaaagtggaacaaaattaaggtc-cgtagtctcatgaattacaacaaaatg |
3531963 |
T |
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