View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_37 (Length: 369)
Name: NF15254_low_37
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 4604808 - 4604984
Alignment:
| Q |
4 |
caacacacacaatgttacaaaacgtacctggtaattggaggagccagtaccaaaaacaaaaccttccggaaaactgctccggcttagctcagaactgtca |
103 |
Q |
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| T |
4604808 |
caacacacacaatgttacaaaatgtacctggtaattggaggagccagtaccaaaaacaaaaccttccgggaaactgctccgacttagctcagaactgtca |
4604907 |
T |
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| Q |
104 |
tcataattagaactaaaaacagccgcggcctttataggaacagcgaagcgagaaccggcccaaaccttattgatgcc |
180 |
Q |
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| T |
4604908 |
tcatatgtcgtactaataacagctgcggcctttattggaacagaaaggcgagaaccggcccaacacttattgatgcc |
4604984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 4627289 - 4627389
Alignment:
| Q |
8 |
acacacaatgttacaaaacgtacctggtaattggaggagccagtaccaaaaacaaaaccttccggaaaactgctccggcttagctcagaactgtcatcat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||| |
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| T |
4627289 |
acacacaatgttacaaaacgtacctggtaattggaggagccagtaccaaaaacaaaaccttccggaaaactgctccgatttagctcaaaactatcagcat |
4627388 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
4627389 |
a |
4627389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 4605118 - 4605161
Alignment:
| Q |
314 |
ggcatgtcaatttgtttatctttatatacttctacttttatatt |
357 |
Q |
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| T |
4605118 |
ggcatgtcaattggtttatctttatatacttctacttttatatt |
4605161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 18793039 - 18792973
Alignment:
| Q |
41 |
gaggagccagtaccaaaaacaaaaccttccggaaaactgctccggcttagctcagaactgtcatcat |
107 |
Q |
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| T |
18793039 |
gaggaggcagtaccgaaaacgaaacctttcggaaaactactccgacttagatcagaactgtcatcat |
18792973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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