View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_41 (Length: 347)

Name: NF15254_low_41
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_41
NF15254_low_41
[»] chr3 (2 HSPs)
chr3 (20-329)||(513784-514093)
chr3 (52-98)||(51763736-51763782)
[»] chr4 (6 HSPs)
chr4 (20-181)||(371264-371418)
chr4 (53-186)||(21833556-21833689)
chr4 (149-189)||(532590-532630)
chr4 (53-101)||(1601177-1601225)
chr4 (54-186)||(53761062-53761200)
chr4 (69-171)||(641697-641799)
[»] chr8 (3 HSPs)
chr8 (52-186)||(18314886-18315020)
chr8 (76-186)||(18318892-18319002)
chr8 (140-186)||(32151729-32151775)
[»] chr1 (3 HSPs)
chr1 (142-188)||(9587021-9587067)
chr1 (50-174)||(7554865-7554990)
chr1 (69-102)||(19467779-19467812)
[»] chr6 (2 HSPs)
chr6 (68-102)||(6588615-6588649)
chr6 (149-186)||(6588531-6588568)
[»] chr5 (3 HSPs)
chr5 (69-102)||(28532497-28532530)
chr5 (143-188)||(28532574-28532619)
chr5 (52-105)||(32268232-32268285)
[»] chr2 (1 HSPs)
chr2 (149-186)||(32785316-32785353)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 514093 - 513784
Alignment:
Q  20 gaagtaaaagtctgatcgttgggaaagtcgtcggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  514093 gaagtaaaagtctgatcgttgggaaagtcgtcggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgc 513994  T
Q  120 gatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtggaaaagcgattggtcatccaagtgactatgaagagagagatcaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  513993 gatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtggaaaagcgattggtcatccaagtgactatgaagagagagatcaat 513894  T
Q  220 cttgcggagttggaaaagtgagtctgaaagagcctttatcccatcaccatcaattaagtcactgcaaaagcaagggccactgaggtcgagttcttcaagc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  513893 cttgcggagttggaaaagtgagtctgaaagagcctttatcccatcaccatcaattaagtcactgcaaaagcaagggccactgaggtcgagttcttcaagc 513794  T
Q  320 aaggggaaac 329  Q
    ||||||||||    
T  513793 aaggggaaac 513784  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 51763782 - 51763736
Alignment:
Q  52 ggaaaaggatatagaggtcaatgttggtctctcacggagagcagaag 98  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  51763782 ggaaaaggataaagacgtcaatgttggtctttcacggagagcagaag 51763736  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 371264 - 371418
Alignment:
Q  20 gaagtaaaagtct-gatcgttgggaaagtcgtcggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatg 118  Q
    ||||||||||||  |||| ||||||||||||  ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||    
T  371264 gaagtaaaagtcaagatcattgggaaagtcggtggaaaaggataaagaggtcaatgttggtctctgaaggagagcagaagcaataccttgattggttatg 371363  T
Q  119 cgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtggaaaagc 181  Q
     ||| || ||||||||||||||||||        |||||||||||||||||||||||||||||    
T  371364 tgatagctattaaagatgataacctc--------gcttacagtttttgaacaagtggaaaagc 371418  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 21833689 - 21833556
Alignment:
Q  53 gaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaa 152  Q
    |||||||||| |||  ||||||||||||||||||||||||| |||||||| |||| | || ||||  |||| |||| ||| ||||| ||||||| |||||    
T  21833689 gaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaa 21833590  T
Q  153 gcttacagtttttgaacaagtggaaaagcgattg 186  Q
    ||||||| || || | |||||||||||| |||||    
T  21833589 gcttacaattctttagcaagtggaaaagagattg 21833556  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 532590 - 532630
Alignment:
Q  149 agaagcttacagtttttgaacaagtggaaaagcgattggtc 189  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  532590 agaagcttacaatttttgaacaagtggaaaagcgattggtc 532630  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  53 gaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaa 101  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 53761200 - 53761062
Alignment:
Q  54 aaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggtta------tgcgatcgcaattaaagatgataacctcttg 147  Q
    ||||||| | ||| |||||||||||||| |||||||||||||||||||| |||  ||  ||||      | ||||| || ||||| | ||| ||||||||    
T  53761200 aaaaggagaaagacgtcaatgttggtctttcacggagagcagaagcaattcctacttgagttatatttttacgatcacagttaaacaagatgacctcttg 53761101  T
Q  148 aagaagcttacagtttttgaacaagtggaaaagcgattg 186  Q
    |||||| ||||| || || |||||||||||||| |||||    
T  53761100 aagaagattacaattcttcaacaagtggaaaagtgattg 53761062  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 641697 - 641799
Alignment:
Q  69 tcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaa 168  Q
    |||||||||||||||| || | |||||||||||| ||||   ||||||||||||  |||||||  |||||| |||||   ||||| |||||||| |||||    
T  641697 tcaatgttggtctctcgcgtatagcagaagcaatgcctttgatggttatgcgatgacaattaagaatgatagcctctctgagaagtttacagttcttgaa 641796  T
Q  169 caa 171  Q
    |||    
T  641797 caa 641799  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 18315020 - 18314886
Alignment:
Q  52 ggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaaga 151  Q
    ||||| ||||| |||  |||| ||||||||||||||||||||| ||||||||||    ||||||||  |||  || | ||| |||||   |||||  |||    
T  18315020 ggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgaga 18314921  T
Q  152 agcttacagtttttgaacaagtggaaaagcgattg 186  Q
    ||||||||||| |||||||||||||||||||||||    
T  18314920 agcttacagttcttgaacaagtggaaaagcgattg 18314886  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 18319002 - 18318892
Alignment:
Q  76 tggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtgg 175  Q
    |||||||||| |||| | |||||||||||| |  ||||||||  |||| || | ||  |||||  ||||||  |||||||| ||||| ||||||||||||    
T  18319002 tggtctctcatggagggaagaagcaataccatcattggttatttgatcacagtcaagtatgatggcctcttcgagaagcttccagttcttgaacaagtgg 18318903  T
Q  176 aaaagcgattg 186  Q
    | |||||||||    
T  18318902 ataagcgattg 18318892  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 32151729 - 32151775
Alignment:
Q  140 acctcttgaagaagcttacagtttttgaacaagtggaaaagcgattg 186  Q
    |||||||  |||||||| ||||| |||||||||||||||||||||||    
T  32151729 acctcttcgagaagcttccagttgttgaacaagtggaaaagcgattg 32151775  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 9587021 - 9587067
Alignment:
Q  142 ctcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 188  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  9587021 ctcttcaagaagattacaatttttgaacaagtggaaaagcgattggt 9587067  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 7554865 - 7554990
Alignment:
Q  50 tcggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaa-taccttgtttggttatgcgatcgcaattaaagatgataacctcttga 148  Q
    |||| |||||||| |||  ||||||||||||||||| ||||||| |||  || | ||   ||||||||||| ||| || | ||| ||||||||||||||     
T  7554865 tcggtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaaatgccagctttggttatgccatcacactcaaacatgataacctcttgg 7554964  T
Q  149 agaagcttacagtttttgaacaagtg 174  Q
    |||||||| ||||| || ||||||||    
T  7554965 agaagcttgcagttcttaaacaagtg 7554990  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 19467812 - 19467779
Alignment:
Q  69 tcaatgttggtctctcacggagagcagaagcaat 102  Q
    ||||||||||||||||||||| ||||||||||||    
T  19467812 tcaatgttggtctctcacggatagcagaagcaat 19467779  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 6588649 - 6588615
Alignment:
Q  68 gtcaatgttggtctctcacggagagcagaagcaat 102  Q
    |||||| ||||||||||||||||||||||||||||    
T  6588649 gtcaattttggtctctcacggagagcagaagcaat 6588615  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 6588568 - 6588531
Alignment:
Q  149 agaagcttacagtttttgaacaagtggaaaagcgattg 186  Q
    ||||||||||| || |||||||||||||||||||||||    
T  6588568 agaagcttacaattgttgaacaagtggaaaagcgattg 6588531  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 28532497 - 28532530
Alignment:
Q  69 tcaatgttggtctctcacggagagcagaagcaat 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  28532497 tcaatgtcggtctctcacggagagcagaagcaat 28532530  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 28532574 - 28532619
Alignment:
Q  143 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 188  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  28532574 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 28532619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 32268232 - 32268285
Alignment:
Q  52 ggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaatacc 105  Q
    ||||||||||| |||  |||||||||||||||||||||| |||  |||||||||    
T  32268232 ggaaaaggatacagacctcaatgttggtctctcacggagggcattagcaatacc 32268285  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 32785353 - 32785316
Alignment:
Q  149 agaagcttacagtttttgaacaagtggaaaagcgattg 186  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  32785353 agaagcttcaagtttttgaacaagtggaaaagcgattg 32785316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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