View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_low_42 (Length: 330)
Name: NF15254_low_42
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_42 |
 | |
|
| [»] chr8 (16 HSPs) |
| |
|
| [»] scaffold0070 (2 HSPs) |
| |
|
| [»] scaffold0830 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25696148 - 25695838
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
25696148 |
taaaacataataaaaggagaaagaatgaaaatactcttgaaaggggtttgtcaactttgggagctccaagaagaatatcctattatgaacttgtgcaagc |
25696049 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25696048 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgccgttaaagta |
25695949 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25695948 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagattatcagcagtt |
25695849 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25695848 |
gctcaaatctt |
25695838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25715981 - 25715671
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25715981 |
taaaacataataaagggaaaaagaacgaaactactcttgaaaggggtttttcaactttaggagctccaagaagaatatcctattatgaaattgtgcaagc |
25715882 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
25715881 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaaggaaagcttcatgatggtgagatgattgcagtaaaagta |
25715782 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25715781 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagaagtt |
25715682 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25715681 |
gctcaaatctt |
25715671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25801066 - 25800756
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
25801066 |
taaaacataataaaaggaaaaagaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcgtattatgaacttgtgcaagc |
25800967 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
25800966 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcctgatggtgagatgattgcagtcaaagta |
25800867 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||| |
|
|
| T |
25800866 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgtcatcgaaatttggtaaagattatcagcagtt |
25800767 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25800766 |
gctcaaatctt |
25800756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25647800 - 25647490
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
25647800 |
taaaacataataaaaggaaaatgaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaacttgtgcaagc |
25647701 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25647700 |
aactaatggattcaatgagagtaatttccttggaaggggagcatttggatctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
25647601 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25647600 |
attgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgtaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagaagtt |
25647501 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
| ||||||||| |
|
|
| T |
25647500 |
gatcaaatctt |
25647490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25323444 - 25323134
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||| |
|
|
| T |
25323444 |
taaaacataataaaaggagaaagaatgaaaatactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcatattatgaacttttgcaagc |
25323345 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25323344 |
aactaatggattaaatgagagtaatttccttggaagggggggatttggctctgtttatcagggaaagcttcttgatggtgagatgattgcagttaaagta |
25323245 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25323244 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagtt |
25323145 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25323144 |
gctcaaatctt |
25323134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25453770 - 25453460
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| || || |||| |
|
|
| T |
25453770 |
taaagcataataaaaggaaaaagaacgaaacttctcttgaaaggggtttgtcaactttgggaactccaagaagaatatcctattatgaacttttgcaagc |
25453671 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25453670 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
25453571 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25453570 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgaagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagcagtt |
25453471 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25453470 |
gctcaaatctt |
25453460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25311787 - 25311477
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25311787 |
taaagcataataaaaggaaaaagaacaaaacttctcttgaaaggggtttgtcaactttgggagctccaagaagaatatcctattatgaaattgtgcaagc |
25311688 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25311687 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgattgccgttaaagta |
25311588 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
25311587 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagtt |
25311488 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
| ||||||||| |
|
|
| T |
25311487 |
gttcaaatctt |
25311477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25341768 - 25341458
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25341768 |
taaagcataataaaaggaaaaagaacaaaacttctcttgaaaggggtttgtcaactttgggagctccaagaagaatatcctattatgaaattgtgcaagc |
25341669 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25341668 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgattgccgttaaagta |
25341569 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||| |||| |
|
|
| T |
25341568 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatatggttaagattatcagcagtt |
25341469 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
| ||||||||| |
|
|
| T |
25341468 |
gttcaaatctt |
25341458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25605425 - 25605115
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
||||||||||||||| || ||| ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
25605425 |
taaaacataataaaacgagaaagaatgaaaatactcttggaaggggtttgtcaactttgggagctccaagaagaatatcatattatgaacttgtgcaagc |
25605326 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
25605325 |
aacaaatggattcaatgagagtaatttccttggaaggggagcatttggatctgtttatcagggcaagcttcttgatggtgaaatgattgccgttaaagta |
25605226 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25605225 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagcagtt |
25605126 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25605125 |
gctcaaatctt |
25605115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 25686438 - 25686128
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
25686438 |
taaaacataataaaaggaaaaggaacgaaactactcatgaaaagggtttgtcaacttggggagctccaagaagaatatcctattatgaacttgttcaagc |
25686339 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25686338 |
aactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgcagttaaagta |
25686239 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
25686238 |
attgatttgcaatcagaggcaaaatcaatgagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctagtaaagattatcggtagtt |
25686139 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
25686138 |
gctcaaatctt |
25686128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 110 - 330
Target Start/End: Original strand, 24912446 - 24912666
Alignment:
| Q |
110 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
209 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24912446 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgc |
24912545 |
T |
|
| Q |
210 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24912546 |
agttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagatt |
24912645 |
T |
|
| Q |
310 |
atcagtagttgctcaaatctt |
330 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
24912646 |
atcagcagttgctcaaatctt |
24912666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 330
Target Start/End: Complemental strand, 25570664 - 25570364
Alignment:
| Q |
30 |
taaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatgga |
129 |
Q |
| |
|
||||||||||| | | ||| |||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| || || ||||||| |||||| |
|
|
| T |
25570664 |
taaaaggaaaagaattaaaagtactcttgaaaggggtttatcagctttaggagctctaagaagaatatcatattatgaacttttgaaagcaacaaatgga |
25570565 |
T |
|
| Q |
130 |
ttcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgc |
229 |
Q |
| |
|
||||||||| | || || ||||||| ||||||||||| ||||| ||| |||||| |||||||||||| |||||||| |||||| ||||||| | |
|
|
| T |
25570564 |
ttcaatgagagaaaattacttggaagggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaaagtatttgatttac |
25570465 |
T |
|
| Q |
230 |
aatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatct |
329 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25570464 |
aatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatct |
25570365 |
T |
|
| Q |
330 |
t |
330 |
Q |
| |
|
| |
|
|
| T |
25570364 |
t |
25570364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 330
Target Start/End: Original strand, 24874739 - 24875039
Alignment:
| Q |
30 |
taaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatgga |
129 |
Q |
| |
|
||||||||||| | | ||| |||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| || || ||||||| |||||| |
|
|
| T |
24874739 |
taaaaggaaaagaattaaaattactcttgaaaggggtttatcagctttaggagctctaagaagaatatcatattatgaacttttgtaagcaacaaatgga |
24874838 |
T |
|
| Q |
130 |
ttcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgc |
229 |
Q |
| |
|
||||||||| | || || ||||||| ||||||||||| ||||| ||| |||||| |||||||||||| |||||||| |||||| ||||||| | |
|
|
| T |
24874839 |
ttcaatgagagaaaattacttggaagggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaaagtatttgatttac |
24874938 |
T |
|
| Q |
230 |
aatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatct |
329 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24874939 |
aatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgtcatcgaaatctggtaaagattatcagtagttgctcaaatct |
24875038 |
T |
|
| Q |
330 |
t |
330 |
Q |
| |
|
| |
|
|
| T |
24875039 |
t |
24875039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 25476449 - 25476140
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||| ||||||||||||||||| | | ||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||| |||| |
|
|
| T |
25476449 |
taaagcataataaaaggaaaaagattcaaaatactcttgaaaggggtttatcaactttaggagctctaagaagaatttcctattatgaacttgtgcaagc |
25476350 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||||||| |||| |||||| || | ||| |||||||||||| ||||||||| |
|
|
| T |
25476349 |
aactaatggattcaatgagtgtaatttacttggacgggggggctttggctctgtatatcgggggaatctccgcaatgatgagatgattgcggttaaagta |
25476250 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| || |||||||| |||||| |
|
|
| T |
25476249 |
attgatttgcagtcagaggcaaaagcaaagagctttgatgtagaatgcaatgcaacgagaaatctacgacatcgaaatcttgttaagattatttgtagtt |
25476150 |
T |
|
| Q |
320 |
gctcaaatct |
329 |
Q |
| |
|
| |||||||| |
|
|
| T |
25476149 |
gttcaaatct |
25476140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 56 - 330
Target Start/End: Complemental strand, 23258944 - 23258682
Alignment:
| Q |
56 |
ttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggattcaatgagggtaatttccttggaan |
155 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
23258944 |
ttgaaaggggtttatcaaccttaggagttccaagaagaatatcatattatgaacttgtgcaagcaacaaatggattcaatgagagcaatttacttggaac |
23258845 |
T |
|
| Q |
156 |
nnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagcttt |
255 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
23258844 |
ggggggctttggctctgtgtatcaagggaagcttcctgatggtgagatgattgcagttaaagtatttgatttgc------------aaacaaagagcttt |
23258757 |
T |
|
| Q |
256 |
gatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatctt |
330 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||| || |||||| |
|
|
| T |
23258756 |
gatgcagaatgcaatgcaatgagaaatctacggcatcgaaatctggttaagattatcagcagttgttccaatctt |
23258682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 22900082 - 22900389
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||| ||| |||||| | ||||||||||||||||| || |||||||| ||||| |||| |
|
|
| T |
22900082 |
taaaacttaataaaaggaaaatggttgaaaatactcttgaaagaaatttatcaactcttggagctccaagaagaatttcttattatgagcttgtgcaagc |
22900181 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||| |||||||| |||||| ||||||| ||||||| |||||| ||||| ||| ||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
22900182 |
aacaaatggatttaatgagagtaatttgcttggaaggggaggatttgggtctgtgtatgaggggaagctttcaaatggtgagatatttgcggttaaagtg |
22900281 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
||||||||| | || ||| ||||| | |||||||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| |||| |
|
|
| T |
22900282 |
attgatttgaactcggaggaaaaattacggagctttgatcgagaatgcaatgcattgagaaatctacggcatcgaaatctggttaagattatcagcagtt |
22900381 |
T |
|
| Q |
320 |
gctcaaat |
327 |
Q |
| |
|
| |||||| |
|
|
| T |
22900382 |
gttcaaat |
22900389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 16316 - 16626
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
16316 |
taaaacataataaaaggagaaagaatgaaaatactcttgaaaggggtttgtcaactctaggagctccaagaagaatatcctattatgaacttgtgcaagc |
16415 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16416 |
aactaatggattcaatgagagtaatttccttggaagtgggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgccgttaaagta |
16515 |
T |
|
| Q |
220 |
attgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagtt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
16516 |
attgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatttggtaaagattatcagcagtt |
16615 |
T |
|
| Q |
320 |
gctcaaatctt |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
16616 |
gctcaaatctt |
16626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 49834 - 49967
Alignment:
| Q |
20 |
taaaacataataaaaggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagc |
119 |
Q |
| |
|
|||| |||||||||||| |||| | | ||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||| |||| |
|
|
| T |
49834 |
taaagcataataaaaggtaaaagattcaaaatactcttgaaaggggtttatcaactttaggagctctaagaagaatttcctattatgaacttgtgcaagc |
49933 |
T |
|
| Q |
120 |
aactaatggattcaatgagggtaatttccttgga |
153 |
Q |
| |
|
|||||||||||| | |||| ||||||| |||||| |
|
|
| T |
49934 |
aactaatggatttagtgagtgtaatttacttgga |
49967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 45 - 330
Target Start/End: Original strand, 3827 - 4112
Alignment:
| Q |
45 |
tgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggattcaatgagggtaat |
144 |
Q |
| |
|
||||| |||| ||||||||||||| ||| | ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| | || |
|
|
| T |
3827 |
tgaaaatacttttgaaaggggtttatcagcattaggagctccaagaagaatatcatattatgaacttgtggaagcaacaaatggattcgaagagagcaaa |
3926 |
T |
|
| Q |
145 |
ttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgcaatcagagacaaaat |
244 |
Q |
| |
|
|| ||||||| ||||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
3927 |
ttacttggaagggggagctttggttctgtgtatgaggggaagcttcctaatggtgagatgattgcagttaaagtaattgatttgcaatctgaggcaaaat |
4026 |
T |
|
| Q |
245 |
caaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatctt |
330 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
4027 |
caaagagttttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatctt |
4112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 10324621 - 10324333
Alignment:
| Q |
34 |
aggaaaaacaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggattca |
133 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||| |||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
10324621 |
aggaaaaacgttgaaaatactcttgaaagggaattatcagttttaggagctacaagaagaatatcatattatgaacttgtggaagcaacaaatggtttca |
10324522 |
T |
|
| Q |
134 |
atgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgcaatc |
233 |
Q |
| |
|
||||| |||| || ||||||| ||||||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||||||||| | |
|
|
| T |
10324521 |
atgagagtaaattacttggaagggggagctttggctctgtgtatcaggggatgcttcctgacggtgagatgattgcagtcaaagtaattgatt------c |
10324428 |
T |
|
| Q |
234 |
agagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatc |
328 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
10324427 |
agaggcaaaatcaacaagctttgatgcagaatgcaatgtaatgagaaatctacgacatcgaaatctggttaagattatcagtagttgttcaaatc |
10324333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 5119052 - 5119129
Alignment:
| Q |
77 |
taggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggattcaatgagggtaatttccttggaa |
154 |
Q |
| |
|
|||||| ||||||||| || |||||||||||| ||||| |||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
5119052 |
taggagttccaagaaggatttcctattatgaacttgtgcaagcaactaatggattcagtgacagtaatttacttggaa |
5119129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 5101471 - 5101570
Alignment:
| Q |
55 |
cttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggattcaatgagggtaatttccttggaa |
154 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||| ||| || |||||||||||| | ||| |||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
5101471 |
cttgaaaggggtttacacactataggagttccaaaaaggatttcctattatgaactagtgcaagcaactaatggattcagtgagagtaatttacttggaa |
5101570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 14412812 - 14412715
Alignment:
| Q |
57 |
tgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggattcaatgagggtaatttccttggaa |
154 |
Q |
| |
|
|||||||||||| || ||| |||||| ||||| ||| || |||||||||||| | || |||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
14412812 |
tgaaaggggtttatccactgtaggagttccaataaggatttcctattatgaactcgtccaagcaactaatggattcagcgagactaatttacttggaa |
14412715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 16885749 - 16885828
Alignment:
| Q |
55 |
cttgaaaggggtttgtcaact---ttaggagctccaagaagaatatcctattatgaaattgtggaagcaactaatggatt |
131 |
Q |
| |
|
||||||| |||||| |||||| ||||| | ||||||||| || || ||||||||| ||||| |||||||||||||||| |
|
|
| T |
16885749 |
cttgaaatgggtttatcaactgatttaggggttccaagaaggatttcatattatgaacttgtgcaagcaactaatggatt |
16885828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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