View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_43 (Length: 325)
Name: NF15254_low_43
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 49174734 - 49174441
Alignment:
| Q |
21 |
caagcttcctcatctcagttttaactctgttccttgatcagaagcaaaatgtaaattcttttttcacctatcatttactttgttggatctgctgccacca |
120 |
Q |
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| T |
49174734 |
caagcttcctcatctcagttttaactctgttccttgatcagaagcaaaatgtaa-ttcttttttcaccgatcatttactttgttggatctgctgccacca |
49174636 |
T |
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| Q |
121 |
tgatataaggatttggttctcaagcttggtacttttatcacctgcattacttatttctaattcaagatcggtgcagagttcatgcaaatttaagattatg |
220 |
Q |
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| T |
49174635 |
tgatataaggttttggttctcgagcttggtacttttatcacctgcattacttatttctaattcaagatcggtgcagagttcatgcaaatttaagattatg |
49174536 |
T |
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| Q |
221 |
aaaaggactattttgttaatatagaaatacctcttgcgcttgctcttcaatgcattagaagttgaaggattgctgtgccagttcctcttcctttg |
315 |
Q |
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| T |
49174535 |
aaaaggactatttttttaatatagaaatacctcttgcgcttgctcttcaatgcattagaagttgaaggattgctgtgccagttcctcttcctttg |
49174441 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 2743995 - 2744061
Alignment:
| Q |
249 |
acctcttgcgcttgctcttcaatgcattagaagttgaaggattgctgtgccagttcctcttcctttg |
315 |
Q |
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|||| ||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
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| T |
2743995 |
accttttgcgtttgctcttcaagacagtagaagttgaaggattgctgtgccaattcctcttcctttg |
2744061 |
T |
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