View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_44 (Length: 321)
Name: NF15254_low_44
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 602006 - 602281
Alignment:
| Q |
36 |
atatctactaataatcattattgttatttgcgttttgtagttatgtcgttaagttattagctaggaggggccacttaatcaatacggacaaatatttaaa |
135 |
Q |
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| T |
602006 |
atatctactaataatcattattgttatttgcgttttgtagttatgtcgttaagtttttag----gagggaccacttagtcaatacggacaaatatttaaa |
602101 |
T |
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| Q |
136 |
aattgtttaaaattctgacaacaatcgatgatttgttttgacaatagaaattcatatcgtctttatgattagttgatgacctattnnnnnnnnnntacaa |
235 |
Q |
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| T |
602102 |
aattgtttaaaattctgacaacaatcgatgatgtgttttgaaaatagaagttcatatcgtctttatggttaggtgataacctatt-aaaaaaaaatacaa |
602200 |
T |
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| Q |
236 |
ggagaagcaaataagagtactacataccaatcatatcataacca------taaccataaatttgatgttttgcatagtatt |
310 |
Q |
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| T |
602201 |
ggagaagcaaataagagtactacataccaatcatatcataaccataaccttaaccataaatttgatgttttgcatagtatt |
602281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 805016 - 805090
Alignment:
| Q |
231 |
tacaaggagaagcaaataagagtactacataccaatcatatcataaccataaccataaatttgatgttttgcata |
305 |
Q |
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| T |
805016 |
tacaaggaaaaacaaatgagagtactacatatctttcctatcataaccataaccaaaaagttgatgttttgcata |
805090 |
T |
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