View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_46 (Length: 313)
Name: NF15254_low_46
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 1349774 - 1349489
Alignment:
| Q |
10 |
attatacttcctattagaatttgtgagaagaacatttgaattccacctgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatga |
109 |
Q |
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| T |
1349774 |
attatacttcctattagaatttgtgagaagaacatttgaattccacctgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatga |
1349675 |
T |
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| Q |
110 |
atgttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatggttaaaaataggattggagcataaaagga |
209 |
Q |
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| T |
1349674 |
atgttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatggttaaaaataggattggagcataaaagga |
1349575 |
T |
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| Q |
210 |
aatgacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattttctttgtaagatat |
295 |
Q |
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| T |
1349574 |
aatgacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattttctttgtaagatat |
1349489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 286
Target Start/End: Complemental strand, 1356659 - 1356455
Alignment:
| Q |
82 |
agtttatcaactatgagcattgatatgaatgttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatgg |
181 |
Q |
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| T |
1356659 |
agtttatctactatgaacattgatatgaacgttgaaccagtacctactatgcctgtcatgacagatgatagaagcgatgcactttctcctaacccaattg |
1356560 |
T |
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| Q |
182 |
ttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattt |
281 |
Q |
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| T |
1356559 |
ttctgaaaagtaaaggggcatagaaagcgatgacattgatccctgtcacttgttggaaaaatggtattgctattgccattacaagttgaggtctatatct |
1356460 |
T |
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| Q |
282 |
tcttt |
286 |
Q |
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| T |
1356459 |
tcttt |
1356455 |
T |
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