View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_52 (Length: 284)
Name: NF15254_low_52
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_52 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 32732 - 33009
Alignment:
| Q |
7 |
caagtggtggtggtggtgaaacgcaacagtacttcatcttcaagaaatactactgttggatatggagagtgtcaaaagaatcatgcagcttatagtggag |
106 |
Q |
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| T |
32732 |
caagtggtggtggtggtgaaacgcaacagtacttcatcttcaagaaatactactgttggatatggagagtgtcaaaagaatcatgcagcttatagtggag |
32831 |
T |
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| Q |
107 |
gctatgctgttgatggatgtatggaattcatggcatgttcaggggaagaagcacttacatgtgctgcttgtggttgtcataggaacttccacaaaagaaa |
206 |
Q |
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| T |
32832 |
gctatgctgttgatggatgtatggaattcatggcatgttcaggggaagaagcacttacatgtgctgcttgtggttgtcataggaacttccacaaaagaaa |
32931 |
T |
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| Q |
207 |
agtattgcaaagtacagactgaggtagtcagtagtaccttaattctttctgattgtgtattcaattaactgattcatc |
284 |
Q |
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| T |
32932 |
agtattgcaaagtacagactgaggtagtcagtagtaccttaattctttctgattgtgtattcaattaactcattcatc |
33009 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 3643153 - 3643214
Alignment:
| Q |
66 |
atatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctgttgatggatgta |
127 |
Q |
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| T |
3643153 |
atatggagagtgtcagaagaatcatgcagctaatgttggaggttatgctgttgatggttgta |
3643214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 13902388 - 13902250
Alignment:
| Q |
65 |
gatatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctgttgatggatgtatggaattcatggcatgttcaggggaagaa-------- |
156 |
Q |
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| T |
13902388 |
gatatggtgagtgtcaaaagaatcatgcagcaaatattggagggtatgctgtagatggttgcagagagttcatggcgagtaccggagaaggaacaagtgg |
13902289 |
T |
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| Q |
157 |
-gcacttacatgtgctgcttgtggttgtcataggaactt |
194 |
Q |
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| T |
13902288 |
ggctcttacatgtgctgcttgtggttgtcataggaactt |
13902250 |
T |
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