View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_53 (Length: 278)
Name: NF15254_low_53
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 46428812 - 46428634
Alignment:
| Q |
12 |
acagactccattttaattgcattcctttccatttcacaatttgcatgtgatgtgagggaagccacaacattttaagattatgaattgatgatcatgtaaa |
111 |
Q |
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| T |
46428812 |
acagactccattttaattgcattcctttccatt-cacaatttgcatgtgatgtgagggaagccacaacattttaagattatgaattgatgatcatgtaaa |
46428714 |
T |
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| Q |
112 |
atatatcattccttcgaccaagccatcaacaagagattgaagaaaacaagcacaagaattgtttagtgtcattttgttaa |
191 |
Q |
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| T |
46428713 |
atatatcattccttcgaccaagccatcaacaagagattgaagaaaacaagcacaagaattgtttagtgtcatttttttaa |
46428634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 46627800 - 46627891
Alignment:
| Q |
96 |
ttgatgatcatgtaaaatatatcattccttcgaccaagccatcaacaagagattga-agaaaacaagcacaagaattgtttagtgtcatttt |
186 |
Q |
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| T |
46627800 |
ttgatgatcatgtaaaacagatcattcattagaccaaactatcaacaccagattgtgaaaaaacaagcacaagaattgtttagtgtcatttt |
46627891 |
T |
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