View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_55 (Length: 274)
Name: NF15254_low_55
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 27444546 - 27444402
Alignment:
| Q |
111 |
tccaccaccaccagaaccagtagctccaccaaatgaagtaataatcaaccctccaccacctcagaagaacaaatttccggttgcaagattttttggcata |
210 |
Q |
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| T |
27444546 |
tccaccaccaccagaaccagtagctccatcagatgaagtaataatcaaccgtccaccacctcagaagaacaaatttccggttgcaagattttttggcata |
27444447 |
T |
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| Q |
211 |
atttctggtattgtttttggggtcgcctgcttaatggtagttgca |
255 |
Q |
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| T |
27444446 |
atttctggtattgtttttggggtcgcctgcttaatggtagttgca |
27444402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 27444627 - 27444591
Alignment:
| Q |
87 |
tccaccacctcagaagaagaaatttccaccaccacca |
123 |
Q |
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| T |
27444627 |
tccaccacctcagaagaacaaatttccacctccacca |
27444591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 27444629 - 27444601
Alignment:
| Q |
160 |
cctccaccacctcagaagaacaaatttcc |
188 |
Q |
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| T |
27444629 |
cctccaccacctcagaagaacaaatttcc |
27444601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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