View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_57 (Length: 267)
Name: NF15254_low_57
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 42 - 254
Target Start/End: Complemental strand, 24708762 - 24708550
Alignment:
| Q |
42 |
tagaagctcccatatgtatctatcattgttttttactcggccactatgaagacatagaattaaaagttattgggaataagagaaacctgaaagaacacat |
141 |
Q |
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| T |
24708762 |
tagaaactcccatatgtctctatcattgttttttaatcggccactatgaagacaataaattaaacgttatttggaataagagaaacctgaaagaacacat |
24708663 |
T |
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| Q |
142 |
tgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatat |
241 |
Q |
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| T |
24708662 |
tgaagtccatccagaaagttggatactgcaataataggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatat |
24708563 |
T |
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| Q |
242 |
tgcgaattagtat |
254 |
Q |
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||||||||||||| |
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| T |
24708562 |
tgcgaattagtat |
24708550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 30511132 - 30511344
Alignment:
| Q |
41 |
ttagaagctcccatatgtatctatcattgttttttactcggccactatgaagacatagaattaaaagttattgggaataagagaaacctgaaagaacaca |
140 |
Q |
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|||||||||||||| ||| |||||| |||||||| |||| | | ||||||||| | | ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
30511132 |
ttagaagctcccatttgtctctatcgttgtttttgactcagtctctatgaagaaaga-aattaaaagttatagggaagaagagaaacctgaaagaacact |
30511230 |
T |
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| Q |
141 |
ttgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatata |
240 |
Q |
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| T |
30511231 |
ttgtattccatccagaaagttggatactgcaataataggcaacataattgctacatatttgacaacttcttcttcattgctataagcatatccccatata |
30511330 |
T |
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| Q |
241 |
ttgcgaattagtat |
254 |
Q |
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|||||||||||||| |
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| T |
30511331 |
ttgcgaattagtat |
30511344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 30501554 - 30501640
Alignment:
| Q |
165 |
tactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatattgcgaattag |
251 |
Q |
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|||||||| || ||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
30501554 |
tactgcaagaagtggcatcatatttgctacatatttgaccacttcttcttcattgctataagcatatccccatatattgcgaattag |
30501640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 30483551 - 30483681
Alignment:
| Q |
124 |
aaacctgaaagaacacattgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctat |
223 |
Q |
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||||||||||||||| ||| | ||||| || |||| |||||| |||| |||||||| ||||||||||||||| || || ||||||||||||||||||| |
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| T |
30483551 |
aaacctgaaagaacagcttgcatgccatctagtaagtgggatacggcaagaattggcatcatagttgctacataatttaccacttcttcttcattgctat |
30483650 |
T |
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| Q |
224 |
aagcgtatcccaatatattgcgaattagtat |
254 |
Q |
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||||||| ||| ||| ||| |||| |||||| |
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| T |
30483651 |
aagcgtagccccataaattacgaactagtat |
30483681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 30475659 - 30475736
Alignment:
| Q |
132 |
aagaacacattgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttc |
209 |
Q |
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|||||||| ||||||| ||||||||||| ||||||||||| |||||| |||||| |||||| | |||||||||||| |
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| T |
30475659 |
aagaacactttgtagtgaatccagaaagtaggatactgcaagaattggtaacataattgctatttgtttgacaacttc |
30475736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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