View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_6 (Length: 653)

Name: NF15254_low_6
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_6
NF15254_low_6
[»] chr1 (2 HSPs)
chr1 (111-635)||(28939228-28939758)
chr1 (11-83)||(28939131-28939203)
[»] chr7 (1 HSPs)
chr7 (563-635)||(40327273-40327345)


Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 111 - 635
Target Start/End: Original strand, 28939228 - 28939758
Alignment:
Q  111 gttgaggcctaagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccac 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28939228 gttgaggcctgagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccat 28939327  T
Q  211 aatcaccactatggtgcacccgactatatactgttagattaaaagagagaaaaatcatctcataatctaacaatctacacagccggctatagaggattcg 310  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939328 aatcaccactatggtgcacccgactatagactgttagattaaaagagaaaaaaatcatctcataatctaacaatctacacagccggctatagaggattcg 28939427  T
Q  311 ggttaaaaaatcactcaaggtgttggaataagacaaacagcttggcgatttcgatcttgtgtagcaccgcagcctctccggccaaacacgagcctttaga 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939428 ggttaaaaaatcactcaaggtgttggaataagacgaacagcttggcgatttcgatcttgtgtagcaccgcagcctctccggccaaacacgagcctttaga 28939527  T
Q  411 ttaatccaacgaccgatgtttgaccgaaaagactacaaattttcttatccctcaattattttgaaaatatacataagagaccaacatacagaaaactatt 510  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939528 ttaatccaacgaccgatgtttggccgaaaagactacaaattttcttatccctcaattattttgaaaatatacataagagaccaacatacagaaaactatt 28939627  T
Q  511 tcaaaatgaatatgagaatc------tatatagttatggtaaagaagagagaatgaaaatacttttgagattgcaaaaaagattgtcgctgacaaattga 604  Q
    ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28939628 tcaaaatgaatatgagaatctatatatatatagttatggtaaagaagagagaatgaaaatacttttgagattgcaaaaaagattgtcactgacaaattga 28939727  T
Q  605 gaagcttcagctccaccatgaccatcataaa 635  Q
    |||||||||||||||||||||||||||||||    
T  28939728 gaagcttcagctccaccatgaccatcataaa 28939758  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 28939131 - 28939203
Alignment:
Q  11 aagaaaattggattagtaataataaactcaaaacaaagggtagcttagtgcatgagggttaaatacacatgca 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939131 aagaaaattggattagtaataataaactcaaaacaaagggtagcttagtgcatgagggttaaatacacatgca 28939203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 635
Target Start/End: Original strand, 40327273 - 40327345
Alignment:
Q  563 atacttttgagattgcaaaaaagattgtcgctgacaaattgagaagcttcagctccaccatgaccatcataaa 635  Q
    ||||| |||| |||| | || ||||||||  | ||||| ||||||||| ||| ||||||||||||||||||||    
T  40327273 atactcttgaaattggagaatagattgtcattaacaaactgagaagctgcagttccaccatgaccatcataaa 40327345  T

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