View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_67 (Length: 237)

Name: NF15254_low_67
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_67
NF15254_low_67
[»] chr7 (16 HSPs)
chr7 (69-218)||(35791541-35791690)
chr7 (69-218)||(31320271-31320420)
chr7 (83-219)||(5782856-5782992)
chr7 (86-219)||(48009591-48009723)
chr7 (91-219)||(21948542-21948670)
chr7 (81-170)||(48488571-48488660)
chr7 (108-195)||(5783336-5783423)
chr7 (108-212)||(35791053-35791157)
chr7 (172-219)||(36786048-36786095)
chr7 (178-209)||(40234663-40234694)
chr7 (179-212)||(18485967-18486000)
chr7 (179-212)||(32805544-32805577)
chr7 (172-212)||(31167053-31167093)
chr7 (108-212)||(31319784-31319888)
chr7 (180-212)||(34333290-34333322)
chr7 (172-212)||(36785488-36785528)
[»] chr5 (12 HSPs)
chr5 (69-218)||(1919510-1919659)
chr5 (83-219)||(8283090-8283226)
chr5 (88-219)||(19572080-19572211)
chr5 (83-184)||(33870342-33870443)
chr5 (83-186)||(797758-797861)
chr5 (83-144)||(13348940-13349001)
chr5 (108-212)||(1919023-1919127)
chr5 (108-189)||(8283612-8283693)
chr5 (179-212)||(10069975-10070008)
chr5 (179-212)||(40608683-40608716)
chr5 (180-212)||(10054500-10054532)
chr5 (150-186)||(13349404-13349440)
[»] chr3 (12 HSPs)
chr3 (69-219)||(23516478-23516628)
chr3 (83-172)||(7765400-7765490)
chr3 (102-198)||(27152496-27152592)
chr3 (108-199)||(27151957-27152047)
chr3 (172-212)||(23566988-23567028)
chr3 (172-218)||(18715142-18715188)
chr3 (179-212)||(272226-272259)
chr3 (179-212)||(46352640-46352673)
chr3 (179-212)||(49893337-49893370)
chr3 (180-212)||(20923998-20924030)
chr3 (180-212)||(39074425-39074457)
chr3 (180-212)||(52520687-52520719)
[»] chr6 (14 HSPs)
chr6 (83-218)||(20969376-20969513)
chr6 (83-218)||(9960818-9960953)
chr6 (108-206)||(20968954-20969052)
chr6 (172-219)||(1603996-1604043)
chr6 (179-212)||(2350658-2350691)
chr6 (149-212)||(2480714-2480777)
chr6 (172-219)||(8701334-8701381)
chr6 (181-219)||(34706870-34706908)
chr6 (103-196)||(10777644-10777737)
chr6 (172-217)||(22398526-22398571)
chr6 (182-219)||(24663200-24663237)
chr6 (180-212)||(392102-392134)
chr6 (172-212)||(8700871-8700911)
chr6 (180-212)||(27433498-27433530)
[»] chr2 (18 HSPs)
chr2 (83-219)||(36600000-36600136)
chr2 (88-187)||(2280961-2281062)
chr2 (88-194)||(16112940-16113046)
chr2 (99-217)||(18112890-18113008)
chr2 (88-194)||(16319546-16319652)
chr2 (172-219)||(28277510-28277557)
chr2 (103-197)||(16113497-16113590)
chr2 (179-212)||(31438652-31438685)
chr2 (179-219)||(29293062-29293102)
chr2 (181-212)||(8373303-8373334)
chr2 (172-215)||(25571772-25571815)
chr2 (108-195)||(36599517-36599604)
chr2 (179-212)||(561665-561698)
chr2 (179-212)||(32361016-32361049)
chr2 (179-212)||(44854487-44854520)
chr2 (182-218)||(10164831-10164867)
chr2 (180-212)||(35851917-35851949)
chr2 (172-212)||(39865397-39865437)
[»] chr1 (17 HSPs)
chr1 (83-219)||(32822914-32823049)
chr1 (83-219)||(34540294-34540432)
chr1 (83-219)||(8123736-8123871)
chr1 (81-219)||(29313764-29313902)
chr1 (97-219)||(47026463-47026583)
chr1 (83-212)||(11650885-11651014)
chr1 (179-212)||(48383258-48383291)
chr1 (179-212)||(52702293-52702326)
chr1 (108-196)||(32824256-32824344)
chr1 (180-212)||(38702081-38702113)
chr1 (172-219)||(12377212-12377259)
chr1 (181-219)||(12072061-12072099)
chr1 (179-212)||(28726053-28726086)
chr1 (179-212)||(29657777-29657810)
chr1 (179-212)||(38595900-38595933)
chr1 (111-212)||(44681622-44681723)
chr1 (178-219)||(48282858-48282899)
[»] chr8 (12 HSPs)
chr8 (88-219)||(7939676-7939806)
chr8 (81-218)||(43723733-43723870)
chr8 (85-194)||(4285676-4285785)
chr8 (172-219)||(16063088-16063135)
chr8 (172-219)||(45185043-45185090)
chr8 (172-218)||(15451209-15451255)
chr8 (179-212)||(13643018-13643051)
chr8 (179-212)||(13743443-13743476)
chr8 (179-212)||(16394208-16394241)
chr8 (179-212)||(39751619-39751652)
chr8 (108-196)||(4285124-4285211)
chr8 (180-212)||(30675720-30675752)
[»] chr4 (15 HSPs)
chr4 (83-187)||(43005857-43005961)
chr4 (83-219)||(7576092-7576226)
chr4 (81-219)||(28104604-28104741)
chr4 (80-219)||(29864879-29865017)
chr4 (108-193)||(25163839-25163924)
chr4 (111-212)||(27109007-27109108)
chr4 (108-188)||(43005503-43005583)
chr4 (172-212)||(43012737-43012777)
chr4 (181-218)||(10426066-10426103)
chr4 (179-212)||(54897314-54897347)
chr4 (180-212)||(4268970-4269002)
chr4 (111-195)||(12633305-12633389)
chr4 (180-212)||(15186249-15186281)
chr4 (180-212)||(18068027-18068059)
chr4 (178-218)||(24142169-24142209)
[»] scaffold0127 (2 HSPs)
scaffold0127 (83-216)||(23058-23193)
scaffold0127 (108-206)||(23523-23621)
[»] scaffold0003 (1 HSPs)
scaffold0003 (180-212)||(53833-53865)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 35791541 - 35791690
Alignment:
Q  69 ggaagtgtatatttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacatta 168  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35791541 ggaagtgtatctttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacatta 35791640  T
Q  169 atattattgttccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35791641 atattattgttccttaaccagtgccccgggggcaccggttagcaacaccc 35791690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 31320271 - 31320420
Alignment:
Q  69 ggaagtgtatatttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacatta 168  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31320271 ggaagtgtatctttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttacttgaatgaaattaaatgagacacatta 31320370  T
Q  169 atattattgttccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31320371 atattattgttccttaaccagtgccccgggggcaccggttagcaacaccc 31320420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 5782992 - 5782856
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    |||| |||||||||||| |||||  ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  5782992 aagaatattaaatgcagcgtttttctattttaattaagttgataaacttttcactttaattcaataaaattaaatgagacacattaatattattgttcct 5782893  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||||  | ||||||||||||||||||||||    
T  5782892 taaccagtgccttgagagcaccggttagcaacaccct 5782856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 48009723 - 48009591
Alignment:
Q  86 agtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaa 185  Q
    ||||||||||| ||  ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  48009723 agtattaaatgtagcatttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaataaaacacattaatattattattccttaa 48009624  T
Q  186 ccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||  | |||| ||||||||||||||||||||    
T  48009623 ccagtaactcggg-gcaccggttagcaacaccct 48009591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 21948542 - 21948670
Alignment:
Q  91 taaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagt 190  Q
    ||||||||||||||   ||||||||||| |||||  | ||||||| ||||||||||  |||||||||||||| | | ||| |||||||||||||||| ||    
T  21948542 taaatgcagtgtttctctattttaattaagttgactatcttttcattttaattgaagtaaattaaatgagactcgtcaattttattgttccttaacccgt 21948641  T
Q  191 gccccgggagcaccggttagcaacaccct 219  Q
     |||||||| |||| ||||||| ||||||    
T  21948642 accccgggaacaccagttagcagcaccct 21948670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 48488660 - 48488571
Alignment:
Q  81 ttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaat 170  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||| | ||||| | ||||||||||  |||||||||||||| |||||||    
T  48488660 ttaagagtactaaatgcagtgttttcctattttaattaagttgattatctttttattttaattgaagtaaattaaatgagactcattaat 48488571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 5783336 - 5783423
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgcccc 195  Q
    ||||||||||| |||||  ||||||||||||||||| ||  ||||||| ||  |   |||||| ||||||||||||||||||||||||    
T  5783336 tattttaattaagttgaccaacttttcactttaattaaaataaattaagtggaatcaattaattttattgttccttaaccagtgcccc 5783423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 35791157 - 35791053
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccggt 207  Q
    ||||||||||| |||||  || ||||| |||||||| ||  ||||||| ||  ||  |||||| |||||||||||||||||||||||| || |||| ||     
T  35791157 tattttaattaagttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttaaccagtgccccaggggcactgga 35791058  T
Q  208 tagca 212  Q
    |||||    
T  35791057 tagca 35791053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 36786048 - 36786095
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||| | |||||||||||||||||| ||||||||||||| ||||||    
T  36786048 ttattgcttcttaaccagtgccccgggggcaccggttagcagcaccct 36786095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 40234663 - 40234694
Alignment:
Q  178 ttccttaaccagtgccccgggagcaccggtta 209  Q
    ||||||||||||||||||||||||||||||||    
T  40234663 ttccttaaccagtgccccgggagcaccggtta 40234694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 18486000 - 18485967
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  18486000 tccttaaccagtgccccgggggcaccggttagca 18485967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 32805577 - 32805544
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||||| ||||||||||||    
T  32805577 tccttaaccagtgccccgggaacaccggttagca 32805544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 31167053 - 31167093
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||| ||||||||||||| |||| ||||||||    
T  31167053 ttattgttccttatccagtgccccgggggcactggttagca 31167093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 31319888 - 31319784
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccggt 207  Q
    ||||||||||| |||||  || ||||| |||||||| ||  ||||||| ||  ||  |||| | |||||||||||||||||||||||| || |||| ||     
T  31319888 tattttaattaagttgaccaatttttccctttaattaaagtaaattaagtggaactaattatttttattgttccttaaccagtgccccaggggcactgga 31319789  T
Q  208 tagca 212  Q
    |||||    
T  31319788 tagca 31319784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 34333322 - 34333290
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  34333322 ccttaaccagtgccccgggggcaccggttagca 34333290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 36785528 - 36785488
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||| |||||||||||||||||||| ||||||| |||||    
T  36785528 ttattgctccttaaccagtgccccgggggcaccggatagca 36785488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 1919510 - 1919659
Alignment:
Q  69 ggaagtgtatatttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacatta 168  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1919510 ggaagtgtatctttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacatta 1919609  T
Q  169 atattattgttccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1919610 atattattgttccttaaccagtgccccgggggcaccggttagcaacaccc 1919659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 8283226 - 8283090
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  8283226 aagagtattaaatgcagcgtttttctattttaattaagttgataaacttttgactttaattgaatgaaattaaatgagacacataaatattattgttcct 8283127  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||||||| || ||| ||| ||||||||||||||||    
T  8283126 taaccagtgtcctgggggcatcggttagcaacaccct 8283090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 19572211 - 19572080
Alignment:
Q  88 tattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaacc 187  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  19572211 tattaaatgcagcgttttcctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccctaatc 19572112  T
Q  188 agtgccccgggagcaccggttagcaacaccct 219  Q
    | |||  |||  ||||||||||||||||||||    
T  19572111 aatgcttcggaggcaccggttagcaacaccct 19572080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 33870342 - 33870443
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    |||||||||||||||| ||||||| ||||||||||| |||||  || |||||||| ||||||    |||||||||| |||||||||||  ||||||||||    
T  33870342 aagagtattaaatgcaatgttttcctattttaattaagttgactaatttttcactgtaattgtggtaaattaaatgggacacattaattatattgttcct 33870441  T
Q  183 ta 184  Q
    ||    
T  33870442 ta 33870443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 797861 - 797758
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||||||  |||||| ||||||||||| |||||  |||||||||| ||||||| |  |||||||||| || | ||||||  ||||||| ||    
T  797861 aagagtattaaatgcaacgttttcctattttaattaagttgactaacttttcacattaattgtagtaaattaaatgggatagattaattatattgtttct 797762  T
Q  183 taac 186  Q
    ||||    
T  797761 taac 797758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 13349001 - 13348940
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattg 144  Q
    |||||||||||||||||||||||| |||||||||||  ||||  || |||||||||||||||    
T  13349001 aagagtattaaatgcagtgttttcctattttaattaaattgactaatttttcactttaattg 13348940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 1919127 - 1919023
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccggt 207  Q
    ||||||||||| |||||  || ||||| |||||||| ||  ||||||||||  ||  |||||| |||||||||||||||||||||||| || |||| ||     
T  1919127 tattttaattaagttgaccaatttttccctttaattaaagtaaattaaatggaactaattaattttattgttccttaaccagtgccccaggggcactgga 1919028  T
Q  208 tagca 212  Q
    |||||    
T  1919027 tagca 1919023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 8283612 - 8283693
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccag 189  Q
    ||||||||||| |||||| ||||||||||||||||| ||  ||||||| ||  |   |||||| ||||||||||||||||||    
T  8283612 tattttaattaggttgatcaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccag 8283693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 10070008 - 10069975
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  10070008 tccttaaccagtgccccgggggcaccggttagca 10069975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 40608683 - 40608716
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||| ||||||||||||||||||||    
T  40608683 tccttaaccagtgtcccgggagcaccggttagca 40608716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 10054500 - 10054532
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  10054500 ccttaaccagtgccccgggggcaccggttagca 10054532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 13349404 - 13349440
Alignment:
Q  150 aattaaatgagacacattaatattattgttccttaac 186  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  13349404 aattaaatgggacacattaattttattgttccttaac 13349440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 23516478 - 23516628
Alignment:
Q  69 ggaagtgtatatttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacatta 168  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23516478 ggaagtgtatctttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttacttgaatgaaattaaatgagacacatta 23516577  T
Q  169 atattattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23516578 atattattgttccttaaccagtgccccgggggcaccggttagcaacaccct 23516628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 7765490 - 7765400
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaat-gaaattaaatgagacacattaatat 172  Q
    |||| |||||||| |||| ||||  ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  7765490 aagaatattaaatacagtatttttctattttaattaagttgataaacttttcactttaattgaatcaaaattaaatgagacacattaatat 7765400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 27152496 - 27152592
Alignment:
Q  102 ttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccggg 198  Q
    ||||| ||||||||||| |||||  ||||||||||||||||||    |||||||||| ||  |||||||  ||||||||||||||| ||||| ||||    
T  27152496 ttttcctattttaattaagttgactaacttttcactttaattgtggtaaattaaatgggatgcattaattatattgttccttaaccggtgcctcggg 27152592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 27152047 - 27151957
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccggga 199  Q
    ||||||||||| |||||  ||| ||||| |||||||||    |||||||||| || |||||||  |||||||||||||||||||||||||||    
T  27152047 tattttaattaagttgacgaacatttca-tttaattgagattaattaaatgaaacgcattaattatattgttccttaaccagtgccccggga 27151957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 23566988 - 23567028
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  23566988 ttattgttccttatccagtgcccccggagcaccggttagca 23567028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 18715188 - 18715142
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||| |||||||||||||||||  ||||||||||||| |||||    
T  18715188 ttattgtttcttaaccagtgccccggaggcaccggttagcagcaccc 18715142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 272259 - 272226
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  272259 tccttaaccagtgccccgggggcaccggttagca 272226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 46352673 - 46352640
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  46352673 tccttaaccagtgccccgggggcaccggttagca 46352640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 49893370 - 49893337
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  49893370 tccttaaccagtgccccgggggcaccggttagca 49893337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 20924030 - 20923998
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||| ||||||||||||||    
T  20924030 ccttaaccagtgccccggaagcaccggttagca 20923998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 39074457 - 39074425
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  39074457 ccttaaccagtgccccgggggcaccggttagca 39074425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 52520719 - 52520687
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  52520719 ccttaaccagtgccccgggggcaccggttagca 52520687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 20969376 - 20969513
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaa---tattattgtt 179  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  20969376 aagagtattaaattcagtgttttcctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattattgtt 20969475  T
Q  180 ccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    ||||||||||||  ||||| |||||||||||||||||||    
T  20969476 ccttaaccagtg-tccgggggcaccggttagcaacaccc 20969513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 9960818 - 9960953
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||||||| |||||  ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  9960818 aagagtattaaatgcagcgtttttctattttaattaagttaataaacttttcaatttaattgaatgaaattaaatgagacactttaatattattgttcct 9960917  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||| | | | |||||||||||||||||||    
T  9960918 taaccagtgctctgagggcaccggttagcaacaccc 9960953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 20969052 - 20968954
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccgg 206  Q
    ||||||||||| |||||  ||||||||||||||||| ||  ||||||| ||  |   |||||| |||||||||||||||||||||||||||||||||||    
T  20969052 tattttaattaagttgaccaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccagtgccccgggagcaccgg 20968954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 1604043 - 1603996
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||    
T  1604043 ttattgcttcttaaccagtgccccgggggcaccggttagcaacaccct 1603996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 2350691 - 2350658
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||||||||||||||||||    
T  2350691 tccttaaccagtgccccgggagcaccggttagca 2350658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 2480777 - 2480714
Alignment:
Q  149 aaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||| || ||| |||| || ||||||||||||||||||||||||||| |||| || |||||    
T  2480777 aaattaagtgggacccattgattttattgttccttaaccagtgccccgggggcactggatagca 2480714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 8701334 - 8701381
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||| || |||||||||||||||||| ||||||||||||| ||||||    
T  8701334 ttattatttcttaaccagtgccccgggggcaccggttagcagcaccct 8701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 34706870 - 34706908
Alignment:
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  34706870 cttaaccagtgccccgggggcaccggttagcaagaccct 34706908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 10777644 - 10777737
Alignment:
Q  103 tttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccg 196  Q
    |||| ||||||||||| |||||| ||||||| | ||||||||||  ||||||| || | |  ||| || |||||||||||||| |||| |||||    
T  10777644 tttcctattttaattaagttgatcaacttttaattttaattgaagtaaattaagtggggcctattgattttattgttccttaatcagtaccccg 10777737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 22398571 - 22398526
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacacc 217  Q
    ||||||||| |||||||||||||  || ||||||||||||||||||    
T  22398571 ttattgttctttaaccagtgccctaggggcaccggttagcaacacc 22398526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 24663237 - 24663200
Alignment:
Q  182 ttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||||||| || ||||||||||||||||||||    
T  24663237 ttaaccagtgccccaggggcaccggttagcaacaccct 24663200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 392134 - 392102
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  392134 ccttaaccagtgccccgggggcaccggttagca 392102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 8700911 - 8700871
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||| || ||||| ||||||||||||||||||    
T  8700911 ttattgttccttatccggtgcctcgggagcaccggttagca 8700871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 27433530 - 27433498
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  27433530 ccttaaccagtgccccgggggcaccggttagca 27433498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 36600000 - 36600136
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    |||| ||||||||||||  ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36600000 aagaatattaaatgcagcatttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 36600099  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||| ||||  |||||||||||||| |||||    
T  36600100 taaccagtgcaccggaggcaccggttagcaaaaccct 36600136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 2280961 - 2281062
Alignment:
Q  88 tattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagac--acattaatattattgttccttaa 185  Q
    ||||||||||||  ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||    
T  2280961 tattaaatgcagcatttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgaaacgtacattaatattattgtttcttaa 2281060  T
Q  186 cc 187  Q
    ||    
T  2281061 cc 2281062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 16113046 - 16112940
Alignment:
Q  88 tattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaacc 187  Q
    ||||||||||| ||||||||||||||||||| |||||  ||||||||||||| ||||||  |||||||||| ||| |||||||  |||||||| ||||||    
T  16113046 tattaaatgcaatgttttcttattttaattaagttgactaacttttcactttgattgaaataaattaaatgggacgcattaattatattgttctttaacc 16112947  T
Q  188 agtgccc 194  Q
     ||||||    
T  16112946 ggtgccc 16112940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 18112890 - 18113008
Alignment:
Q  99 gtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccggg 198  Q
    |||||| | ||||||||||| |||||  | ||||||| ||||||||||  |||||||||||||| ||| ||| |||||||||||||| | |||||| |||    
T  18112890 gtgtttccctattttaattaagttgactatcttttcattttaattgaagtaaattaaatgagactcatcaattttattgttccttaatccgtgccctggg 18112989  T
Q  199 agcaccggttagcaacacc 217  Q
    |||||||||||||| ||||    
T  18112990 agcaccggttagcagcacc 18113008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 16319546 - 16319652
Alignment:
Q  88 tattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaacc 187  Q
    |||||||||||||||| |||||||||||||| |||||  ||||||||||||| |||||   |||||||||| ||| |||||||  ||||||| ||||| |    
T  16319546 tattaaatgcagtgttatcttattttaattaagttgactaacttttcactttgattgagataaattaaatgggacgcattaattatattgtttcttaatc 16319645  T
Q  188 agtgccc 194  Q
     ||||||    
T  16319646 ggtgccc 16319652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 28277557 - 28277510
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  28277557 ttattgttccttaaccagtgccccgggggcaccagttagcaacaccct 28277510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 16113497 - 16113590
Alignment:
Q  103 tttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgg 197  Q
    |||| ||||||||||| |||||  ||||||||| |||||||||    ||||||||| |||||||||||  ||||||||||| ||||||| |||||    
T  16113497 tttcctattttaattaagttgactaacttttca-tttaattgaggttaattaaatgggacacattaattatattgttcctttaccagtgtcccgg 16113590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 31438685 - 31438652
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||||||||||||||||||    
T  31438685 tccttaaccagtgccccgggagcaccggttagca 31438652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 29293062 - 29293102
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  29293062 tccttaaccggtgccccgggggcaccggttagcaacaccct 29293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 212
Target Start/End: Original strand, 8373303 - 8373334
Alignment:
Q  181 cttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||||||||||||||||    
T  8373303 cttaaccagtgccccgggagcaccggttagca 8373334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 25571772 - 25571815
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaaca 215  Q
    |||||| | |||||||||||| ||||||||||||||||||||||    
T  25571772 ttattgcttcttaaccagtgctccgggagcaccggttagcaaca 25571815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 36599604 - 36599517
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgcccc 195  Q
    |||||||||||  ||||| ||||||||||||||||| ||  ||||||| ||  ||  |||||| |||||| |||||||| ||||||||    
T  36599604 tattttaattaaattgatcaacttttcactttaattaaagtaaattaagtggaactaattaattttattggtccttaactagtgcccc 36599517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 561665 - 561698
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  561665 tccttaaccagtgccccgggggcaccggttagca 561698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 32361016 - 32361049
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  32361016 tccttaaccagtgccccgggggcaccggttagca 32361049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 44854487 - 44854520
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||||| |||||||||||    
T  44854487 tccttaaccagtgccccgggagtaccggttagca 44854520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 10164831 - 10164867
Alignment:
Q  182 ttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||||||| || |||||||||||||||||||    
T  10164831 ttaaccagtgccccaggggcaccggttagcaacaccc 10164867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 35851917 - 35851949
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  35851917 ccttaaccagtgccccgggggcaccggttagca 35851949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 39865397 - 39865437
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||| ||||||||||||| |||| ||||||||    
T  39865397 ttattgttccttatccagtgccccgggggcactggttagca 39865437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 32823049 - 32822914
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    |||||||||||||| || |||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32823049 aagagtattaaatgtagcgtttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 32822950  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||||  ||| | | ||||||||||||||||    
T  32822949 taaccagtgccatggg-gtatcggttagcaacaccct 32822914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 34540432 - 34540294
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagac--acattaatattattgttc 180  Q
    |||| |||||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  34540432 aagaatattaaatgcagcgtttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgagacgttcattaatattattgttc 34540333  T
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
     ||||||||||||  ||| ||||||||||||||||||||    
T  34540332 tttaaccagtgccatgggggcaccggttagcaacaccct 34540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 8123736 - 8123871
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||||||  |||||  ||||| ||||| |||||| ||||||||||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  8123736 aagagtattaaatgcatcgttttgctattt-aattaagttgattaacttttcactttaattgaagtaaattaaatgagactcattaattttattgttcct 8123834  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||  |||| ||||  ||||||||||||| ||||||    
T  8123835 taacaggtgctccggaggcaccggttagcagcaccct 8123871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 29313764 - 29313902
Alignment:
Q  81 ttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttc 180  Q
    |||| |||| ||||||||| |||| | ||||||||||| |||||  | ||||||| ||||||||||  |||||||||||||| ||| ||| |||||||||    
T  29313764 ttaacagtactaaatgcagcgtttccatattttaattaagttgactatcttttcattttaattgaagtaaattaaatgagactcatcaattttattgttc 29313863  T
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||||| |||| |||||| ||||||||| |||||||||    
T  29313864 cttaacccgtgctccgggaacaccggttaacaacaccct 29313902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 47026583 - 47026463
Alignment:
Q  97 cagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccg 196  Q
    |||||||| | ||||||||||| |||||  | ||||||| ||||||||||  |||||||||||||| ||| ||| |||||||||||||| | ||||||      
T  47026583 cagtgtttccctattttaattaagttgactatcttttcattttaattgaagtaaattaaatgagactcatcaattttattgttccttaatccgtgccc-- 47026486  T
Q  197 ggagcaccggttagcaacaccct 219  Q
    || ||||||||||||| ||||||    
T  47026485 ggggcaccggttagcagcaccct 47026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 11650885 - 11651014
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||| |||  ||||| || |||||||| |||||  ||| |||||||||||||||   |||||||||  ||   |||||| |||| ||| ||    
T  11650885 aagagtattaaatacagcattttcctaatttaattaagttgactaacatttcactttaattgagctaaattaaataggatctattaattttatagtttct 11650984  T
Q  183 taaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||| ||||||||||||||||||    
T  11650985 taaccagtgcctcgggagcaccggttagca 11651014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 48383258 - 48383291
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||||||||||||||||||    
T  48383258 tccttaaccagtgccccgggagcaccggttagca 48383291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 52702293 - 52702326
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||||||||||||||||||    
T  52702293 tccttaaccagtgccccgggagcaccggttagca 52702326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 32824256 - 32824344
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccg 196  Q
    ||||||||||| |||||  ||||||||||||||||| ||  ||||||| ||  |   |||||| |||||||||||||||||| ||||||    
T  32824256 tattttaattaagttgaccaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccagggccccg 32824344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 38702081 - 38702113
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||||||||||||||||    
T  38702081 ccttaaccagtgccccgggagcaccggttagca 38702113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 12377259 - 12377212
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  12377259 ttattgctccttaaccagtgtcccggaggcaccggttagcaacaccct 12377212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 12072099 - 12072061
Alignment:
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  12072099 cttaaccagtgccccgggggcaccggttagcagcaccct 12072061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 28726053 - 28726086
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  28726053 tccttaaccagtgccccgggggcaccggttagca 28726086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 29657810 - 29657777
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  29657810 tccttaaccagtgccccgggggcaccggttagca 29657777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 38595900 - 38595933
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  38595900 tccttaaccagtgccccgggggcaccggttagca 38595933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 44681622 - 44681723
Alignment:
Q  111 tttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccggttag 210  Q
    |||||||| |||||  || |||| | ||||||||||  ||||||| || | | |||| || |||||||||||||||||||||||| || |||| || |||    
T  44681622 tttaattaagttgaccaatttttaattttaattgaagtaaattaagtggggcccattgattttattgttccttaaccagtgcccccggggcactggatag 44681721  T
Q  211 ca 212  Q
    ||    
T  44681722 ca 44681723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 48282899 - 48282858
Alignment:
Q  178 ttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||||||||||||||||||| |||||||||| ||| |||||    
T  48282899 ttccttaaccagtgccccgggggcaccggttaacaagaccct 48282858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 7939806 - 7939676
Alignment:
Q  88 tattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaacc 187  Q
    |||||||||| | |||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7939806 tattaaatgcggcgtttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaatgagacac-ttaatattattgtcccttaacc 7939708  T
Q  188 agtgccccgggagcaccggttagcaacaccct 219  Q
     || ||||| | ||||||||||||||||||||    
T  7939707 ggtaccccgagggcaccggttagcaacaccct 7939676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 43723870 - 43723733
Alignment:
Q  81 ttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttc 180  Q
    |||| |||| ||||||||  |||| | ||||||||||| |||||  | ||||||| ||||||||||  |||||||||||||| ||| ||| ||||||||     
T  43723870 ttaacagtactaaatgcatcgtttccctattttaattaagttgactatcttttcattttaattgaagtaaattaaatgagactcatcaattttattgttg 43723771  T
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    ||||||| |||||||||| ||||||||||||| |||||    
T  43723770 cttaacccgtgccccgggggcaccggttagcagcaccc 43723733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 4285676 - 4285785
Alignment:
Q  85 gagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcctta 184  Q
    ||||||||||||||  |||||| ||||||||||| |||||  ||||||||||||||||||    |||||||||| ||| |||||||  |||| |||||||    
T  4285676 gagtattaaatgcaacgttttcctattttaattaagttgactaacttttcactttaattgtggtaaattaaatgggacgcattaattatattattcctta 4285775  T
Q  185 accagtgccc 194  Q
    ||||||||||    
T  4285776 accagtgccc 4285785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 16063135 - 16063088
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  16063135 ttattgtttcttaacccgtgccccgggagcaccggttagcagcaccct 16063088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 45185043 - 45185090
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  45185043 ttattgtttcttaaccagtgccccgggggcaccggttagcagcaccct 45185090  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 15451209 - 15451255
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||| |||||||||||||||||||  ||||||||||||| |||||    
T  15451209 ttattgctccttaaccagtgccccggaggcaccggttagcagcaccc 15451255  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 13643051 - 13643018
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  13643051 tccttaaccagtgccccgggggcaccggttagca 13643018  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 13743476 - 13743443
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  13743476 tccttaaccagtgccccgggggcaccggttagca 13743443  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 16394208 - 16394241
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  16394208 tccttaaccagtgccccgggggcaccggttagca 16394241  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 39751619 - 39751652
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  39751619 tccttaaccagtgccccgggggcaccggttagca 39751652  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 4285211 - 4285124
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccg 196  Q
    ||||||||||| |||||  ||| ||||| |||||||||    |||||||||  ||||||||||  |||||||||||||||||| |||||    
T  4285211 tattttaattaagttgaccaacatttca-tttaattgagattaattaaatggaacacattaattatattgttccttaaccagtaccccg 4285124  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30675720 - 30675752
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  30675720 ccttaaccagtgccccgggggcaccggttagca 30675752  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 43005857 - 43005961
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  43005857 aagagtattaaatgcagcgtttttctattttaattaagttgataaacttttcactttaattgaatgaaattaaataagacatattaatattattgttcct 43005956  T
Q  183 taacc 187  Q
    |||||    
T  43005957 taacc 43005961  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 7576092 - 7576226
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttcct 182  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  7576092 aagagtattaaatgcatcgttttcctattttaattaaattgataaacttttcactttaattgaataaaattaaatgagacatgttaatattattgttcct 7576191  T
Q  183 taaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||  ||||||  || |||||| |||||||||||||    
T  7576192 taactggtgccc--ggggcaccgattagcaacaccct 7576226  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 28104604 - 28104741
Alignment:
Q  81 ttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttc 180  Q
    |||| |||| |||||||||||||| |||| |||||||| |||||  | ||||||| ||||||||||  ||||||||| |||| ||| ||| ||||||||     
T  28104604 ttaacagtactaaatgcagtgtttccttaatttaattaagttgactatcttttcattttaattgaaataaattaaataagactcatcaattttattgttt 28104703  T
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    ||||||| |||||||||| ||||||||||||| ||||||    
T  28104704 cttaacccgtgccccggg-gcaccggttagcagcaccct 28104741  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 29864879 - 29865017
Alignment:
Q  80 tttaagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgtt 179  Q
    ||||| |||| ||||||||  |||| | ||||||||||| |||||  | ||||||| ||||||||||  |||||||||||||| ||| ||| ||||| ||    
T  29864879 tttaacagtactaaatgcatcgtttccatattttaattaagttgactatcttttcattttaattgaagtaaattaaatgagactcatcaattttattatt 29864978  T
Q  180 ccttaaccagtgccccgggagcaccggttagcaacaccct 219  Q
    | |||||| |||| ||| |||||||||||| |||||||||    
T  29864979 ctttaacc-gtgctccgagagcaccggttaacaacaccct 29865017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 25163839 - 25163924
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgcc 193  Q
    ||||||||||| |||||| ||||||| | ||||||||||  ||||||| || | | |||| || ||||||||||||||||||||||    
T  25163839 tattttaattaagttgatcaacttttaattttaattgaagtaaattaagtggggctcattgattttattgttccttaaccagtgcc 25163924  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 27109007 - 27109108
Alignment:
Q  111 tttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccggttag 210  Q
    |||||||| |||||  || |||| | ||||||||||  ||||||| || ||| |||| || ||||||||||||||||||||||||||| |||| || |||    
T  27109007 tttaattaagttgaccaatttttaattttaattgaagtaaattaagtgggacccattgattttattgttccttaaccagtgccccgggggcactggatag 27109106  T
Q  211 ca 212  Q
    ||    
T  27109107 ca 27109108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 43005583 - 43005503
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaacca 188  Q
    ||||||||||| |||||  ||||||||||||||||| ||  ||||||| ||| |   |||||| |||||||||||||||||    
T  43005583 tattttaattaagttgaccaacttttcactttaattaaagtaaattaagtgaaatcaattaattttattgttccttaacca 43005503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 43012777 - 43012737
Alignment:
Q  172 ttattgttccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  43012777 ttattgttccttatccagtgccccgggggcaccggttagca 43012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 10426066 - 10426103
Alignment:
Q  181 cttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  10426066 cttaaccagtgccccgggggcaccggttagcagcaccc 10426103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 54897347 - 54897314
Alignment:
Q  179 tccttaaccagtgccccgggagcaccggttagca 212  Q
    |||||||||||||||||||| |||||||||||||    
T  54897347 tccttaaccagtgccccgggggcaccggttagca 54897314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 4268970 - 4269002
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  4268970 ccttaaccagtgccccgggggcaccggttagca 4269002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 12633305 - 12633389
Alignment:
Q  111 tttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgcccc 195  Q
    |||||||| |||||  || |||| | ||||||||||  ||||||| || | | |||| || ||||||||||||||||||||||||    
T  12633305 tttaattaagttgaccaatttttaattttaattgaagtaaattaagtggggcccattgattttattgttccttaaccagtgcccc 12633389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 15186281 - 15186249
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  15186281 ccttaaccagtgccccgggggcaccggttagca 15186249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 18068027 - 18068059
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  18068027 ccttaaccagtgccccgggggcaccggttagca 18068059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 24142209 - 24142169
Alignment:
Q  178 ttccttaaccagtgccccgggagcaccggttagcaacaccc 218  Q
    |||||||||||||||| | |||||||||||||||| |||||    
T  24142209 ttccttaaccagtgcctctggagcaccggttagcatcaccc 24142169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 23193 - 23058
Alignment:
Q  83 aagagtattaaatgcagtgttttcttattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatat---tattgtt 179  Q
    |||||||||||||  |  |||||| |||||| |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||   |||||||    
T  23193 aagagtattaaatttaacgttttcctattttgattaagttgataaactttagactttaattgaatgaaattaaatgagatacattaatattattattgtt 23094  T
Q  180 ccttaaccagtgccccgggagcaccggttagcaacac 216  Q
    ||||||| |||| | |||| |||||||||||||||||    
T  23093 ccttaacgagtg-ctcgggggcaccggttagcaacac 23058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 23523 - 23621
Alignment:
Q  108 tattttaattatgttgataaacttttcactttaattgaatgaaattaaatgagacacattaatattattgttccttaaccagtgccccgggagcaccgg 206  Q
    ||||||||||| |||||  ||||||||||||||||| ||  ||||||| ||  ||  |||||| |||||||| ||||||||||||||||||||||||||    
T  23523 tattttaattaagttgaccaacttttcactttaattaaagtaaattaagtggaaccaattaattttattgtttcttaaccagtgccccgggagcaccgg 23621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 53833 - 53865
Alignment:
Q  180 ccttaaccagtgccccgggagcaccggttagca 212  Q
    ||||||||||||||||||| |||||||||||||    
T  53833 ccttaaccagtgccccgggggcaccggttagca 53865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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