View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_68 (Length: 237)

Name: NF15254_low_68
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_68
NF15254_low_68
[»] scaffold0028 (2 HSPs)
scaffold0028 (1-233)||(110176-110413)
scaffold0028 (175-233)||(127755-127813)
[»] chr2 (6 HSPs)
chr2 (1-233)||(21189457-21189693)
chr2 (1-233)||(2590556-2590798)
chr2 (175-233)||(18739115-18739173)
chr2 (175-229)||(35969281-35969335)
chr2 (175-221)||(14433603-14433649)
chr2 (189-233)||(1043200-1043244)
[»] chr3 (3 HSPs)
chr3 (1-175)||(16366254-16366427)
chr3 (148-233)||(19930008-19930097)
chr3 (148-233)||(42253534-42253623)
[»] chr1 (6 HSPs)
chr1 (1-229)||(9111368-9111599)
chr1 (175-233)||(12141656-12141714)
chr1 (175-233)||(24981166-24981224)
chr1 (175-233)||(47580452-47580510)
chr1 (175-233)||(43254171-43254228)
chr1 (170-210)||(51465563-51465603)
[»] chr4 (7 HSPs)
chr4 (51-233)||(895498-895685)
chr4 (175-234)||(13010537-13010596)
chr4 (175-233)||(6667723-6667781)
chr4 (175-231)||(20058107-20058163)
chr4 (175-234)||(44643507-44643565)
chr4 (175-216)||(6671395-6671436)
chr4 (175-234)||(31767452-31767510)
[»] chr8 (10 HSPs)
chr8 (2-233)||(21185145-21185383)
chr8 (175-233)||(1788903-1788961)
chr8 (175-233)||(39655703-39655761)
chr8 (175-233)||(17028410-17028468)
chr8 (175-233)||(17558846-17558904)
chr8 (202-233)||(21347167-21347198)
chr8 (175-209)||(38676893-38676927)
chr8 (1-38)||(21184461-21184498)
chr8 (175-207)||(17088774-17088806)
chr8 (175-231)||(38678742-38678797)
[»] chr7 (8 HSPs)
chr7 (175-233)||(22301155-22301213)
chr7 (170-234)||(3850538-3850602)
chr7 (179-233)||(11674056-11674110)
chr7 (175-233)||(31210079-31210137)
chr7 (175-231)||(31206630-31206686)
chr7 (170-233)||(39426450-39426513)
chr7 (175-233)||(15569622-15569679)
chr7 (175-233)||(32352433-32352490)
[»] scaffold0014 (1 HSPs)
scaffold0014 (175-233)||(82677-82735)
[»] chr6 (6 HSPs)
chr6 (175-233)||(6591853-6591911)
chr6 (175-233)||(19697849-19697907)
chr6 (178-231)||(15518074-15518127)
chr6 (175-233)||(24044937-24044994)
chr6 (173-234)||(24041632-24041692)
chr6 (175-227)||(19973730-19973781)
[»] chr5 (5 HSPs)
chr5 (175-228)||(18594875-18594928)
chr5 (177-233)||(26703023-26703079)
chr5 (177-233)||(26972756-26972812)
chr5 (86-233)||(13292009-13292160)
chr5 (179-231)||(39292156-39292208)
[»] scaffold0076 (1 HSPs)
scaffold0076 (175-231)||(6764-6820)


Alignment Details
Target: scaffold0028 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 110413 - 110176
Alignment:
Q  1 atctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggtaatttg 100  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  110413 atctcaaaataaaaatcagcataaacatataagcattaaaatcaataagcaaaagaaagagatcgttagacttatctatctttaaaattgcggtgatttg 110314  T
Q  101 aggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtc 195  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||     |||||||||||||||||||||    
T  110313 aggctggtaatgaagagcaaacaaacaccaaaccttgaatagcaataacctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtcactgtc 110214  T
Q  196 cttgacgattttatccgcctcataagcacatatcctcc 233  Q
    ||||| ||||||||||||||||||| | ||||||||||    
T  110213 cttgaggattttatccgcctcataaacgcatatcctcc 110176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 127813 - 127755
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||    
T  127813 aggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcc 127755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21189693 - 21189457
Alignment:
Q  1 atctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggtaatttg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  21189693 atctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaagagaga--tcattagacttatctatctttaaaattgcggtgatttg 21189596  T
Q  101 aggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-atctaa-----ggcgtgacatagtcactgt 194  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||     |||||||||||||||||||    
T  21189595 aggctggtaaagaagagcaaacaaacgccaaaccatgaatagcaataacctgcaaaatagtaaactgtttatctaacctgaggcgtgacatagtcactgt 21189496  T
Q  195 ccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  21189495 ccttgaggattttatccgcctcataagcgcatatcctcc 21189457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2590798 - 2590556
Alignment:
Q  1 atctcaaaataacaatcagcataaacatataagcatt------agaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggt 94  Q
    ||||| |||||| ||| ||||||||||||||||||||      | || |||||| ||||||||||||||||||||||||||||  ||||||| |||||||    
T  2590798 atctctaaataataatgagcataaacatataagcatttaaaaaaaaaacaataaacaaaagagagagatcattagacttatctg-ctttaaa-ttgcggt 2590701  T
Q  95 aatttgaggctggtaatgaaga-gcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacatagt 188  Q
     | |||| || |||||||  || | |||||||||  ||  ||||||  |  || |||||||| || |||||| |||     | || ||||||||||||||    
T  2590700 gacttgaagccggtaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaggcgtgacatagt 2590601  T
Q  189 cactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||    
T  2590600 cactgtccttgaggattttattcgcctcataagcgcatatcctcc 2590556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 18739115 - 18739173
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  18739115 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 18739173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 35969281 - 35969335
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatc 229  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  35969281 aggcgtgacatagtcactgtccttgaagattttatccgcctcaaaagcgcatatc 35969335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 14433603 - 14433649
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataag 221  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  14433603 aggcgtgacatagtcactgtccttgtggattttatccgcctcataag 14433649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 1043244 - 1043200
Alignment:
Q  189 cactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  1043244 cactgtccttgaggattttatccgtctcataggcgcatatcctcc 1043200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 16366254 - 16366427
Alignment:
Q  1 atctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggtaatttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  16366254 atctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaa-agagagatcattagacttatctatctttaaaattgcggtgatttg 16366352  T
Q  101 aggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttatctaa 175  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16366353 aggctggtaatgaagagcaaacaaacatcaaaccatgaatagcaataacctgcaaaatagtaaactgttatctaa 16366427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 19930008 - 19930097
Alignment:
Q  148 acctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||| ||||| ||     |||||||||| |||||| |||||| | || |||||||||||||||||| ||||||||||    
T  19930008 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaagga-tttatccgcctcataagcgcatatcctcc 19930097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 42253534 - 42253623
Alignment:
Q  148 acctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||| ||||| ||     |||||||||| ||||||||||||| | || |||| ||||||||||||| ||||||||||    
T  42253534 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaagga-tttacccgcctcataagcgcatatcctcc 42253623  T

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Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9111368 - 9111599
Alignment:
Q  1 atctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggtaatttg 100  Q
    |||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  9111368 atctcaaaataacaataagtataaacatataaacattaaaatcaataagcaaaagag--agatcattagacttatctatctttaaaattgcggtgatttg 9111465  T
Q  101 aggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacatagtcactgtc 195  Q
    ||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||     |||| |||||||||||||||||||||    
T  9111466 aggctcgtaatgaagagcaaacaaacatcactccatgaatagcaataacctgcaaaatagtaaactgttatataatctgaggcgtgacatagtcactgtc 9111565  T
Q  196 cttgacgattttatccgcctcataagcacatatc 229  Q
    ||||| ||||||||||||||||||||| ||||||    
T  9111566 cttgaggattttatccgcctcataagcgcatatc 9111599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 12141656 - 12141714
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  12141656 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 12141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 24981166 - 24981224
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  24981166 aggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcc 24981224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 47580510 - 47580452
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||  |||||||||    
T  47580510 aggcgtgacatagtcaatgtccttgaagattttatctgcctcataagcgaatatcctcc 47580452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 43254228 - 43254171
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  43254228 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 43254171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 51465603 - 51465563
Alignment:
Q  170 atctaaggcgtgacatagtcactgtccttgacgattttatc 210  Q
    |||| |||||||||||||||||||||||||  |||||||||    
T  51465603 atctgaggcgtgacatagtcactgtccttggagattttatc 51465563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 895685 - 895498
Alignment:
Q  51 aaaagagagagatcattagacttatctatctttaaaattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  895685 aaaagagagagatcattagacttatctatctttaaaattgcggtgatttgaggctggtaatgaagaacaaacaaacaccaaaccatgaatagcaataacc 895586  T
Q  151 tgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    ||||||||||||||||||||||||     || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  895585 tgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 895498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 13010537 - 13010596
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 234  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  13010537 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcct 13010596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 6667723 - 6667781
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  6667723 aggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcc 6667781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 20058107 - 20058163
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 231  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  20058107 aggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcgtatcct 20058163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 44643565 - 44643507
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 234  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||    
T  44643565 aggcgtgacatagtcactgtccttca-gattctatccgcctcataagcgcatatcctcct 44643507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 6671395 - 6671436
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctc 216  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  6671395 aggcgtgacatagtcaccgtccttgaggattttatccgcctc 6671436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 31767452 - 31767510
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 234  Q
    |||||||||| | ||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  31767452 aggcgtgacaaaatcactatccttaaggattt-atccgcctcataagcacatatcctcct 31767510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 21185145 - 21185383
Alignment:
Q  2 tctcaaaataacaatcagcataaacatataagcattag-aatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggtaatttg 100  Q
    |||| |||||| |||||||||||||||||||||||||  || |||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||    
T  21185145 tctctaaataataatcagcataaacatataagcattaataaacaataagcaaaatagagagatcattagacttatctatctttaaaattgtggtgacttg 21185244  T
Q  101 aggctggtaatgaag-agcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacatagtcactgt 194  Q
    | ||   |||||  | || |||||||||  ||  ||||||  |  || |||||||| || |||||| |||     | || | ||||||||||||||||||    
T  21185245 aagccattaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaagcgtgacatagtcactgt 21185344  T
Q  195 ccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  21185345 ccttgaggattttatccgcctcataagcgcatatcctcc 21185383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 1788903 - 1788961
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  1788903 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 1788961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 39655703 - 39655761
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  39655703 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcc 39655761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 17028468 - 17028410
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  17028468 aggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcc 17028410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 17558904 - 17558846
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  17558904 aggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcc 17558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 233
Target Start/End: Complemental strand, 21347198 - 21347167
Alignment:
Q  202 gattttatccgcctcataagcacatatcctcc 233  Q
    ||||||||||||||||||||||||||||||||    
T  21347198 gattttatccgcctcataagcacatatcctcc 21347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 38676927 - 38676893
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttat 209  Q
    |||||||||||||||||||||||||| ||||||||    
T  38676927 aggcgtgacatagtcactgtccttgaggattttat 38676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21184461 - 21184498
Alignment:
Q  1 atctcaaaataacaatcagcataaacatataagcatta 38  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  21184461 atctctaaataataatcagcataaacatataagcatta 21184498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 17088774 - 17088806
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgatttt 207  Q
    |||||||||||||||||||||||||| ||||||    
T  17088774 aggcgtgacatagtcactgtccttgaggatttt 17088806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 38678797 - 38678742
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 231  Q
    |||||||||||||||| |||| |||| ||||| ||||| ||||||||| ||||||||    
T  38678797 aggcgtgacatagtca-tgtctttgaggatttgatccgtctcataagcgcatatcct 38678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 22301155 - 22301213
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  22301155 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 22301213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 3850538 - 3850602
Alignment:
Q  170 atctaaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 234  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  3850538 atctgaggcgtgacatagtcactgtccttgatgattttatacgcctcataagcgcatatcctcct 3850602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 11674110 - 11674056
Alignment:
Q  179 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  11674110 gtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 11674056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 31210079 - 31210137
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  31210079 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcc 31210137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 31206630 - 31206686
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 231  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||    
T  31206630 aggcgtgacatagtcactgtctttgaggattttatccacctcataagcgcatatcct 31206686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 39426450 - 39426513
Alignment:
Q  170 atctaaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| |||||||||  |||||||||    
T  39426450 atctgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatcctcc 39426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 15569679 - 15569622
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||| |||||||||||||   ||||| ||||||||||||||||||||||||||    
T  15569679 aggcgtgacaaagtcactgtccttagggattt-atccgcctcataagcacatatcctcc 15569622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 32352433 - 32352490
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  32352433 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 32352490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 82735 - 82677
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  82735 aggcgtgacatagtcactatccttgaggattttatccgcctcataagcgcatatcctcc 82677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 6591853 - 6591911
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  6591853 aggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 6591911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 19697849 - 19697907
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  19697849 aggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcc 19697907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 15518127 - 15518074
Alignment:
Q  178 cgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 231  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||    
T  15518127 cgtgacatagtcactttccttgaggattatatccgcctcataagcgcatatcct 15518074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 24044937 - 24044994
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  24044937 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 24044994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 24041632 - 24041692
Alignment:
Q  173 taaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 234  Q
    |||||||||||| |||||||||| || | || ||||| |||||||||||| |||||||||||    
T  24041632 taaggcgtgacaaagtcactgtctttaa-gaatttattcgcctcataagcgcatatcctcct 24041692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 19973781 - 19973730
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacata 227  Q
    |||||||||| ||||||||||||| | || |||||||||||||||||| ||||    
T  19973781 aggcgtgacaaagtcactgtccttaaaga-tttatccgcctcataagcgcata 19973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 18594928 - 18594875
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatat 228  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  18594928 aggcgtgacattgtcactgtccttgaagattttatccgcctcataagcgcatat 18594875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 26703023 - 26703079
Alignment:
Q  177 gcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  26703023 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 26703079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 26972756 - 26972812
Alignment:
Q  177 gcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  26972756 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 26972812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 13292160 - 13292009
Alignment:
Q  86 aattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttat-----ctaaggcgt 180  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||  ||||| ||||  || || |||| |||||||||||| || |||     || |||| |    
T  13292160 aattgcggtgatttgaggtcggtaatgaagagcaaacaaccatgaaaccgtgaacggcgatgacctacaaaatagtaaattgctatctgacctgaggcat 13292061  T
Q  181 gacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 233  Q
    |||  ||| ||||||||| | || |||||||||||||||||| ||||||||||    
T  13292060 gacgaagttactgtccttaaaga-tttatccgcctcataagcgcatatcctcc 13292009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 39292208 - 39292156
Alignment:
Q  179 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 231  Q
    |||| ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  39292208 gtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatcct 39292156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 6764 - 6820
Alignment:
Q  175 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 231  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  6764 aggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatcct 6820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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