View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_70 (Length: 233)
Name: NF15254_low_70
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_70 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40962159 - 40961927
Alignment:
| Q |
1 |
gaattggagttgttagaatgagaaagtgttggtttgttggagtgttgtttgtggtggcatatggaagcttgttggtagaagggtacccaattgaagatct |
100 |
Q |
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| T |
40962159 |
gaattggagttgttagaatgagaaagtgttggtttgttggagtgttgtttgtggtggcatatggaagcttgttggtagaagggtacccaattgaagatct |
40962060 |
T |
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| Q |
101 |
agttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatgggaggagtctcttctattatttt |
200 |
Q |
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| T |
40962059 |
agttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatgggaggagtctcttctattatttt |
40961960 |
T |
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| Q |
201 |
gttgaggctgaccatctccctcacaaaaagcct |
233 |
Q |
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| T |
40961959 |
gttgaggctgaccatctccctcacaaaaagcct |
40961927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 40971646 - 40971805
Alignment:
| Q |
74 |
ggtagaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaa |
173 |
Q |
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| T |
40971646 |
ggtagaagggtacccaattgaagatttcattgtgaagttgccaggccaacctaaggttgaattcaaacaatatgctggctatattgatatagatgtaagg |
40971745 |
T |
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| Q |
174 |
catgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcct |
233 |
Q |
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| T |
40971746 |
catgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcct |
40971805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 30907045 - 30906912
Alignment:
| Q |
78 |
gaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatg |
177 |
Q |
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||||||||||| ||||| ||||| ||||| | || ||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
30907045 |
gaagggtaccctattgaggatctggttgttagtcttccaggtcaacctaaagttgaattcagtcaatatgctggttatgttgatattgatgtaaaacatg |
30906946 |
T |
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| Q |
178 |
ggaggagtctcttctattattttgttgaggctga |
211 |
Q |
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| T |
30906945 |
gtagaagcttgttttattattttgttgaagctga |
30906912 |
T |
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