View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_72 (Length: 227)
Name: NF15254_low_72
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 8103034 - 8102818
Alignment:
| Q |
1 |
tacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaactaaataacgaaaaactcaaccc |
100 |
Q |
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| T |
8103034 |
tacgatttcccttcactaagaagctacaaaataaccaatctgatgggttgagtttttcatcatctaataacgaaaaactaaataacgaaaaactcaaccc |
8102935 |
T |
|
| Q |
101 |
atcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacgaacaaaatatcttcccttcaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8102934 |
atcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaaaatatcttcccttcaagca |
8102835 |
T |
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| Q |
201 |
ctttttgcacacctttg |
217 |
Q |
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||||||||||||||||| |
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| T |
8102834 |
ctttttgcacacctttg |
8102818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 40146992 - 40147127
Alignment:
| Q |
82 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacgaacaa |
181 |
Q |
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|||||||||| |||| ||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || | | ||| ||||| |
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| T |
40146992 |
ataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa |
40147091 |
T |
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| Q |
182 |
aatatcttcccttcaagcactttttgcacacctttg |
217 |
Q |
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| T |
40147092 |
aatatcatccctccaatcactttttacacatctttg |
40147127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 8910814 - 8910862
Alignment:
| Q |
107 |
taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa |
155 |
Q |
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| T |
8910814 |
taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa |
8910862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 7637534 - 7637486
Alignment:
| Q |
107 |
taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa |
155 |
Q |
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| T |
7637534 |
taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa |
7637486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 7606703 - 7606673
Alignment:
| Q |
107 |
taggttatttcatttcacaaaggagaaaatc |
137 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7606703 |
taggttatttcatttcacaaaggagaaaatc |
7606673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7606794 - 7606716
Alignment:
| Q |
1 |
tacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaact |
79 |
Q |
| |
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|||||||||| ||||||| | ||| ||||||||| || | || || ||||||||||||||| |||||| | |||||||| |
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| T |
7606794 |
tacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaact |
7606716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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