View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_low_76 (Length: 212)

Name: NF15254_low_76
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_low_76
NF15254_low_76
[»] chr3 (33 HSPs)
chr3 (6-203)||(10500749-10500946)
chr3 (11-203)||(13289845-13290037)
chr3 (11-203)||(13161160-13161352)
chr3 (11-203)||(13171211-13171403)
chr3 (11-203)||(13333084-13333276)
chr3 (11-203)||(13344269-13344461)
chr3 (119-195)||(10077557-10077633)
chr3 (119-201)||(10517773-10517855)
chr3 (119-201)||(11781681-11781763)
chr3 (22-195)||(10433749-10433922)
chr3 (119-195)||(10663814-10663890)
chr3 (22-174)||(10127119-10127271)
chr3 (128-187)||(8861583-8861642)
chr3 (128-187)||(11130739-11130798)
chr3 (128-187)||(11148567-11148626)
chr3 (128-187)||(11159730-11159789)
chr3 (22-195)||(9849930-9850103)
chr3 (22-195)||(11769425-11769598)
chr3 (119-195)||(10032291-10032367)
chr3 (22-93)||(10184433-10184504)
chr3 (22-195)||(9839052-9839225)
chr3 (119-195)||(10260986-10261062)
chr3 (16-78)||(10077454-10077516)
chr3 (22-64)||(10260889-10260931)
chr3 (119-188)||(10089078-10089147)
chr3 (119-188)||(10195961-10196030)
chr3 (22-195)||(10375550-10375723)
chr3 (22-78)||(8861477-8861533)
chr3 (119-195)||(10363503-10363579)
chr3 (22-78)||(10889497-10889553)
chr3 (22-78)||(11130848-11130904)
chr3 (22-78)||(11148676-11148732)
chr3 (22-78)||(11159839-11159895)
[»] chr8 (2 HSPs)
chr8 (8-201)||(11485215-11485408)
chr8 (6-201)||(44957387-44957582)
[»] chr4 (1 HSPs)
chr4 (6-201)||(17852622-17852817)
[»] scaffold0002 (3 HSPs)
scaffold0002 (11-203)||(135585-135777)
scaffold0002 (11-203)||(145636-145828)
scaffold0002 (119-203)||(153941-154025)
[»] chr2 (1 HSPs)
chr2 (119-195)||(26907185-26907261)
[»] chr6 (1 HSPs)
chr6 (22-57)||(31679576-31679611)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 10500749 - 10500946
Alignment:
Q  6 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10500749 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgactaacagaga 10500848  T
Q  106 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10500849 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 10500946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13289845 - 13290037
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  ||||||    
T  13289845 ttgagggataaaagatttttgttggtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacag 13289944  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13289945 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13290037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13161160 - 13161352
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  13161160 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13161259  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13161260 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13161352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13171211 - 13171403
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  13171211 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13171310  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13171311 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13171403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13333084 - 13333276
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| |||||||| ||| |||||||||||| ||||  ||| |||||||||||| |||||||  |||  ||| |  ||| ||    
T  13333084 ttgagggataaaagatttttgttagtgttggatgacctgtggaatgacaattataatgattgggatgagttagtaactccactgattaacggcaaaaaag 13333183  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13333184 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13333276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13344269 - 13344461
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  13344269 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13344368  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13344369 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13344461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10077557 - 10077633
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||||||||| ||||    
T  10077557 gtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaacctttatc 10077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 10517773 - 10517855
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||  |||||||||||||||  ||||||||||||||||| ||||    
T  10517773 gtgattataacaacgcgccaacaaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatctcatga 10517855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 11781763 - 11781681
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||  ||||||||||||||||  |||||||||||||||| ||||    
T  11781763 gtgattataacaactcgccaacaaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatctcatga 11781681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 10433922 - 10433749
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||||||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  10433922 aagatttttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 10433823  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||| ||| ||||||||||||| ||||| |||  |||||||||||| ||||||||||||| ||||||    
T  10433822 attataacaacgcgccaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatc 10433749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10663814 - 10663890
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||  |||||||||||| ||||||||||||| ||||||    
T  10663814 gtgattataacaacgcgcgaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatc 10663890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 10127119 - 10127271
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||||||  | |||||||||| || |  ||| ||||||||| || ||| |||||| |  ||  || || | ||| |||  |||    
T  10127119 aagatttttgtttgtgttggacgatctatggaatgacaattgtaatgattgggatgagctagtaagtcccttcattaatggaaaacctggaagcatggtg 10127218  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctat 174  Q
    || |||||||| ||| ||||||||||||| ||||| ||| |||||||||||||    
T  10127219 attataacaacgcgccaacaaaaagttgctgaggtggcacgcacatttcctat 10127271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 8861583 - 8861642
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  8861583 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 8861642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11130798 - 11130739
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11130798 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 11130739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11148626 - 11148567
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11148626 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 11148567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11159789 - 11159730
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11159789 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 11159730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9849930 - 9850103
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  9849930 aagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 9850029  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||||||| ||||||||||||| ||||| |||  ||||||||| || ||||||||||| | ||||||    
T  9850030 attataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatc 9850103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 11769425 - 11769598
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    |||||||||||||||||| || || ||||||||||||| ||||  ||| |||| |||  || ||| |||||| |  ||  || || | ||| |||  |||    
T  11769425 aagatttttgtttgtgttagatgatatgtggaatgacaattataatgattggggtgaactagtaagtcccttcagtaatggaaaacctggaagcatggtg 11769524  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||||||| ||| ||||||||| ||||| |||  |||||||||||| ||| ||||| ||| ||||||    
T  11769525 attataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaacttctatc 11769598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10032291 - 10032367
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||||||| ||| ||||||||| ||||| ||||||||||||||||| ||| || || ||| ||||||    
T  10032291 gtgattataacaacacgccaacgaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatc 10032367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 10184433 - 10184504
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactccctt 93  Q
    ||||||||||||||| ||||| ||  |||||||||||||||||| ||| ||||||||| || ||| ||||||    
T  10184433 aagatttttgtttgtattggatgatctgtggaatgacagttatgatgattgggatgagctagtaagtccctt 10184504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9839052 - 9839225
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  9839052 aagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 9839151  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||| ||| ||||||||||||| ||||| |||  ||||||||| || ||||||||||| | ||||||    
T  9839152 attataacaacgcgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatc 9839225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10260986 - 10261062
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||| ||| || || ||| ||||||    
T  10260986 gtgattataacaacgcggcaacaaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatc 10261062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 10077454 - 10077516
Alignment:
Q  16 ggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||| |||||||||||||||||| || || ||||||||||||| ||||  ||| ||||||||    
T  10077454 ggataaaagatttttgtttgtgttagatgatatgtggaatgacaattatagtgattgggatga 10077516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 10260889 - 10260931
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttat 64  Q
    ||||||||||||||||||||||||  |||||||||||| ||||    
T  10260889 aagatttttgtttgtgttggacgatctgtggaatgacaattat 10260931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 10089078 - 10089147
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaac 188  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| |||||||||||||    
T  10089078 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaac 10089147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 10195961 - 10196030
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaac 188  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| |||||||||||||    
T  10195961 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaac 10196030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 10375723 - 10375550
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  10375723 aagatttttgtttgtgttggatgatttgtggaatgacaattattatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 10375624  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||| ||| ||| |||||||||  |||| ||||||||||||||||| ||| || || ||| ||||||    
T  10375623 attataacaacgcgccaacgaaaagttgctaaggtagcatgcacatttcctatacatgaactaaaacttctatc 10375550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 8861477 - 8861533
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  8861477 aagatttttgtttgtgttggatgacctatggaatgacaattataatgagtgggatga 8861533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 10363579 - 10363503
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| ||||||||||| | ||||||    
T  10363579 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatcttctatc 10363503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 10889497 - 10889553
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  10889497 aagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatga 10889553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11130904 - 11130848
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  11130904 aagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatga 11130848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11148732 - 11148676
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  11148732 aagatttttgtttgtgttggatgacttatggaatgacaattataatgattgggatga 11148676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11159895 - 11159839
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  11159895 aagatttttgtttgtgttggatgacctttggaatgacaattataatgattgggatga 11159839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 11485215 - 11485408
Alignment:
Q  8 catttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaa 107  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||| |||| |||| |||| ||||||  |||||||||||||||||  ||  ||||||    
T  11485215 catttgaaggatagaagaattttgtttgtgttggacgacatatggaacgacaattatcttgattgggatcggttaataactcccttgattaatggagaaa 11485314  T
Q  108 caggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    | | | |||| ||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11485315 ctgtaagcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaacctctatctgatga 11485408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 44957582 - 44957387
Alignment:
Q  6 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | || |||  |||||||||||| |||||||| ||| |||     
T  44957582 aacatttgatggatagaagatttttgtttgtgttggacgacatatggaatgacaattatatcgattggtctgagttaataacacccttgaccaaccgagg 44957483  T
Q  106 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    ||| | | |||| || || ||||||||||| |||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44957482 aactgaaagcaaggtcatcataacaacacgtgaacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatga 44957387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 17852817 - 17852622
Alignment:
Q  6 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagaga 105  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| |||  |||| || |||||||||||   ||  || |    
T  17852817 aacaattgatggatagaagatttttgtttgtgttggacgacttatggaatgacaattacgttgattggagtgagctagtaactcccttgtttaagggaaa 17852718  T
Q  106 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    | | ||| |||| || || ||||||||||||  | |||||||||| ||||| ||| |||||||||| |||||||||||||||||| |||| |||||    
T  17852717 agctggaagcaaggtcatcataacaacacgcctaaaaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatga 17852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 135777 - 135585
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  135777 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 135678  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  135677 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 135585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 145828 - 145636
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  145828 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 145729  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  145728 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 145636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 154025 - 153941
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  154025 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 26907185 - 26907261
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||   ||||||||||| ||||||||||||||||||||    
T  26907185 gtgattataacaacgcgccaacaaaaagttgcagaggtggcacatacatttcctatacataaattagaacctctatc 26907261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 31679611 - 31679576
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatga 57  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31679611 aagatttttgtttgtgttggatgacatgtggaatga 31679576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University