View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_79 (Length: 208)
Name: NF15254_low_79
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 8690106 - 8690283
Alignment:
| Q |
18 |
gattttacaaagctttgccaactttttacagaattccttttattactagtagcgcaatccatgattttcgatagacatgtatattaaattgtgtataaat |
117 |
Q |
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| T |
8690106 |
gattttacaaagctttgccaactttttacagaattccttttattactagtagcgcaatccatgattttcgatagacatgtatattaaattgtgtataaat |
8690205 |
T |
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| Q |
118 |
atacaattctatttataattattgatataattgttagtttcatcttcaatatataattgtttgttttgcttctctgct |
195 |
Q |
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| T |
8690206 |
atacaattctatttataattattgatataattgttagtttcatcttcaatatataattgtttgttttgctactctgct |
8690283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 8729367 - 8729489
Alignment:
| Q |
72 |
caatccatgattttcgatagacatgtatattaaattgtgtataaatatacaattctatttataattattgatataattgttagtttcatcttcaatatat |
171 |
Q |
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| T |
8729367 |
caatccataattttagatagacatgtatattaaattgtgtataaatatacacttctatttatgatta-tgatataattattggtttcatcttcaatatat |
8729465 |
T |
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| Q |
172 |
aattgtttgttttgcttctctgct |
195 |
Q |
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| T |
8729466 |
aattgcatgttctgctactctgct |
8729489 |
T |
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