View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_low_8 (Length: 588)
Name: NF15254_low_8
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_low_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 21 - 588
Target Start/End: Complemental strand, 49623822 - 49623254
Alignment:
| Q |
21 |
acgtaaacacgatcaccaaatgtctttgctgcagcagagatctcgtgtcaagtcgatccgccacttgtgcagcgttcttcttcattgtctcatggtaact |
120 |
Q |
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| T |
49623822 |
acgtaaacacgatcaccaaatgtctttgcttcagcagagatctcgtgtcaagtcgatccgccacttgtgcagcgttcttcttcattgtctcatggtaact |
49623723 |
T |
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| Q |
121 |
ttccaattatcatatttagtaaagagtagattgttcatggttaattaaaggggaaattaaaaatatggtattgtgatggttgacctagaccaaatatata |
220 |
Q |
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| T |
49623722 |
ttccaattatcatatttagtaaagagtagattgttcatggttaattaaaggggaaattaaaaatatggtattgtgatggttgacctagaccaaatatata |
49623623 |
T |
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| Q |
221 |
tata--attgagatgaactttttggcttttagtttgagttcatatgttattgtgttatcaggattgttttcttggcagcagaagcgtgcttgttggcagc |
318 |
Q |
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| T |
49623622 |
tatataattgagatgaattttttggcttttagtttgagttcatatgttattgtgttatcaggattgttttcttggcagcagaagcatgcttgctggcagc |
49623523 |
T |
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| Q |
319 |
atctgttatgaatgcaatccaaaattcgtatcttaatgagtattttttagggcatgatttgtcttgcctcatactcagcaaaggtgtgtttgctgctgga |
418 |
Q |
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| T |
49623522 |
atctgttatgaatgcaatccaaaatgcgtat-ttaatgagtattttttagggcatgatttgtcttgcctcatactcagcaaaggtgtgtttgctgctgga |
49623424 |
T |
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| Q |
419 |
gctgccttgatcttgttttcaatgttgacttctattttgtactattgggtatactccaaggctgacactggctactgggagaggcaccatggcaaaatac |
518 |
Q |
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| T |
49623423 |
gctgccttgatcttgttttcaatgttgacttctattttgtactattgggtatactccaaggctgacactggctactgggagaggcaccatggcaaaatac |
49623324 |
T |
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| Q |
519 |
acaacctcgttcctgaacttgaaatggcctaaagatttactgctttgaatacggttaggctttaatttac |
588 |
Q |
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| T |
49623323 |
acaacctcgttcctgaacttgaaatggcctaaagatttactgctttgaatacggttaggctttaatttac |
49623254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 396 - 507
Target Start/End: Complemental strand, 49603168 - 49603057
Alignment:
| Q |
396 |
gcaaaggtgtgtttgctgctggagctgccttgatcttgttttcaatgttgacttctattttgtactattgggtatactccaaggctgacactggctactg |
495 |
Q |
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| T |
49603168 |
gcaaaggtgtgtttgctgctggggctgccttgaccttgttctctatgttggcttctattttgtactattgggcacacgccaaggctgacactggtttctg |
49603069 |
T |
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| Q |
496 |
ggagaggcacca |
507 |
Q |
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| T |
49603068 |
ggagaagcacca |
49603057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 49613006 - 49612917
Alignment:
| Q |
396 |
gcaaaggtgtgtttgctgctggagctgccttgatcttgttttcaatgttgacttctattttgtactattgggtatactccaaggctgaca |
485 |
Q |
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| T |
49613006 |
gcaaaggcgtgtttgcggtcggggctgtcttgaccttgttttcaatgttgacttcaattttgtactattgggcatattgcaaagctgaca |
49612917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 49607816 - 49607756
Alignment:
| Q |
404 |
gtgtttgctgctggagctgccttgatcttgttttcaatgttgacttctattttgtactatt |
464 |
Q |
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| T |
49607816 |
gtgtttgctgtcggggctgtcttgaccttgttttcaatgttgacttcgactttgtactatt |
49607756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 14335678 - 14335588
Alignment:
| Q |
95 |
ttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaattaaaggggaaattaaaaatatggt |
189 |
Q |
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| T |
14335678 |
ttcttctacgttctctcatggtaactttccaattatca-at---gtaaagagtagattgctcatagttaattaaggaggaaattaaaaatgtggt |
14335588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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