View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_high_10 (Length: 275)
Name: NF15255_high_10
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_high_10 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 6169616 - 6169366
Alignment:
| Q |
1 |
tttttaagaacgcctctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaagttttcagatgatttcttcgcatatattccggta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6169616 |
tttttaagaacgcctctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaggttttcagatgatttcttcgcatatattccggta |
6169517 |
T |
|
| Q |
101 |
gaggaatagctgtgcggacggtctcatggtcagagtattcagggtgtttggtggtccactgctcttcctgatgttatttgggaaccgttcttctcggacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
6169516 |
gaggaatagctgtgcggacggtctcatggtcagagtattcagggtgtttggtggtccactgctcttcctgatgttattcgggaaccgttcttttcggacc |
6169417 |
T |
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| Q |
201 |
gtttcggttagcctaaataccgttttccttcattttgtttatgttttcttc |
251 |
Q |
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| T |
6169416 |
gtttcggttagcctaaataccgttttccttcattttgtttatgttttcttc |
6169366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 8500727 - 8500818
Alignment:
| Q |
3 |
tttaagaacgcctctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaagttttcagatgatttcttcgcatatattc |
95 |
Q |
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| T |
8500727 |
tttaagaacgcatctctggtgcccatccgtttgagaaacaggtggcataattgttttc-ggcaggattttaggtgatttcttcgcatatattc |
8500818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 32879616 - 32879858
Alignment:
| Q |
16 |
ctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaagttttcagatgatttcttcgcatatattccggtagaggaatagctgtgc |
115 |
Q |
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|||||||||||||| |||||| ||| | |||||||| |||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||| ||||| |
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| T |
32879616 |
ctctggtgccgatccgtttgaaaaaccgatggcacaattgctttctgacatgttttcaggtgatttcttcgcatatattacgggaggggaatagttgtgc |
32879715 |
T |
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| Q |
116 |
ggacggtc-------tcatggtcagagtattcagggtgtttggtggtccactgctcttcctgatgttatttgggaaccgttcttctcggaccgtttcggt |
208 |
Q |
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||| |||| ||||||||| | |||||||||||||||||||||||| |||||||| ||| ||||| || ||||||| || ||||||||| || |
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| T |
32879716 |
ggatggtcgtgctaatcatggtcacaatattcagggtgtttggtggtccaccgctcttccagattttattcagggttcgttcttttcagaccgtttcagt |
32879815 |
T |
|
| Q |
209 |
tagcctaaataccgttttccttcattttgtttatgttttcttc |
251 |
Q |
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| T |
32879816 |
tggcctaaatatcgttttccttaatttaatttttgttttcttc |
32879858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 14103209 - 14103335
Alignment:
| Q |
124 |
tcatggtcagagtattcagggtgtttggtggtccactgctcttcctgatgttatttgggaaccgttcttctcggaccgtttcggttagcctaaataccgt |
223 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||| || || ||||||||||||| ||||||||| ||| |
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| T |
14103209 |
tcatggtcacagtactcagggtgtttggtggtccactgctcttctagatgttattcgggatccgttttt-tcagaccgtttcggttggcctaaatatcgt |
14103307 |
T |
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| Q |
224 |
tttccttcattttgtttatgttttcttc |
251 |
Q |
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| T |
14103308 |
tttccttaattttgtttatgttttcttc |
14103335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 14103112 - 14103203
Alignment:
| Q |
2 |
ttttaagaacgcctctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaagttttcagatgatttcttcgcatatat |
93 |
Q |
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||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||| |||| ||||| || ||||||||||| |||||| |
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| T |
14103112 |
ttttaagaaagcctctctggtgccgatccgtttgagaaacaggtggcacaactgttttccgacaggttttaaggtgatttcttcgaatatat |
14103203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 153168 - 153410
Alignment:
| Q |
2 |
ttttaagaacgcctctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaagttttcagatgatttcttcgcatatattccggtag |
101 |
Q |
| |
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|||||| || |||||| ||||||||||| |||||||||| ||||| |||||||||||| ||| |||||||| || |||||||||||||||| | | || |
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| T |
153168 |
ttttaataatgcctctttggtgccgatccgtttgagaaacaggtgccacaactgcttttcaacaggttttcaggtggtttcttcgcatatatttcaggag |
153267 |
T |
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| Q |
102 |
aggaatagctgtgcggacggtc-------tcatggtcagagtattcagggtgt-ttggtggtccactgctcttcctgatgttatttgggaaccgttcttc |
193 |
Q |
| |
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||||||| |||||||| |||| | ||||||| |||||||||| ||| |||||| ||||||| |||||| || ||||| ||| |||||||| |
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| T |
153268 |
gggaatagttgtgcggatggtctagctaataatggtcacagtattcaggatgtgttggtgatccactgttcttccatattttattcaggagccgttcttt |
153367 |
T |
|
| Q |
194 |
tcggaccgtttcggttagcctaaataccgttttccttcatttt |
236 |
Q |
| |
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|| |||| |||||||||||||||||| ||||| ||| ||||| |
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| T |
153368 |
tcagaccatttcggttagcctaaatattgtttttctttatttt |
153410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 41444031 - 41443870
Alignment:
| Q |
14 |
ctctctggtgccgatctgtttgagaaataggtggcacaactgctttctgacaagttttcagatgatttcttcgcatatattccggtagaggaatagctgt |
113 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||| | |||| |||||||| ||||| |||| |||||||||||| || ||||||| ||| |
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| T |
41444031 |
ctctctggtgttgatccgtttgagaaacaggtggcacaactgcttaccgacaggttttcaggtgattccttcacatatattccgggaggggaatagttgt |
41443932 |
T |
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| Q |
114 |
gcggacggtc-------tcatggtcagagtattcagggtgtttggtggtccactgctcttcc |
168 |
Q |
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||||| ||| |||| |||| ||||||| |||||||||||||||||| ||||||| |
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| T |
41443931 |
gcggatagtccagctaatcatcgtcaccgtattcaaggtgtttggtggtccactactcttcc |
41443870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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