View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15255_high_11 (Length: 255)

Name: NF15255_high_11
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15255_high_11
NF15255_high_11
[»] chr8 (6 HSPs)
chr8 (58-255)||(39851371-39851568)
chr8 (83-255)||(38634373-38634564)
chr8 (189-255)||(38452108-38452175)
chr8 (96-161)||(34537951-34538016)
chr8 (34-102)||(38637465-38637534)
chr8 (105-146)||(38452240-38452281)
[»] chr4 (1 HSPs)
chr4 (202-255)||(44476027-44476081)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 58 - 255
Target Start/End: Original strand, 39851371 - 39851568
Alignment:
Q  58 gcagtttcaattttggatttcattactcactagcacttattctcataacatcttaacttgttacatattattttatttatcttattattcactagcacta 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39851371 gcagtttcaattttggatttcattactcactagcacttattctcataacatcttaacttgttacatattattttatttatcttattattcactagcacta 39851470  T
Q  158 attctcaaaaaacatctcggcgtgttggatattagaagtgacagacatcttattcacattttcgttttgttgagacttcaaaacattcatcatgattc 255  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39851471 attcacaaaaaacatctcggcgtgttggatattagaagtgacagacatcttattcacattttcgttttgttgagacttcaaaacattcatcatgattc 39851568  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 38634373 - 38634564
Alignment:
Q  83 ctcactagcacttattctcataacatcttaacttgttacatattattttatttatcttattattcactagcactaat-tctca---------------aa 166  Q
    |||||||||||||||| ||| |||||||||||||||||||  |||||| |||||||||||||||||| ||||  ||  |||||               ||    
T  38634373 ctcactagcacttattttcaaaacatcttaacttgttacactttatttcatttatcttattattcacaagcaaaaacatctcagcatgttgagtgtgcaa 38634472  T
Q  167 aaacatctcggcgtgttggatattagaagtgacagacatcttattcacatttt---cgttttgttgagacttcaaaacattcatcatgattc 255  Q
    ||||||||| || ||||| || ||||| |||||| ||||||||||||||||||   | ||| ||| ||||||||||||||||||||||||||    
T  38634473 aaacatctcagcatgttgaatgttagaggtgacaaacatcttattcacattttttccatttagtttagacttcaaaacattcatcatgattc 38634564  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 38452175 - 38452108
Alignment:
Q  189 ttagaagtgacagacatcttattcacattttc-gttttgttgagacttcaaaacattcatcatgattc 255  Q
    ||||| |||||| ||||||||||||||||||| |||| ||| ||||||||||  ||||||||||||||    
T  38452175 ttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgattc 38452108  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 34538016 - 34537951
Alignment:
Q  96 attctcataacatcttaacttgttacatattattttatttatcttattattcactagcactaattc 161  Q
    ||||||| ||||||||||| |||| ||  ||||||| |||||||||||| ||||||||||| ||||    
T  34538016 attctcaaaacatcttaacctgttccagtttattttgtttatcttattactcactagcacttattc 34537951  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 38637465 - 38637534
Alignment:
Q  34 ctttttacatttgaactctattctgcagtttcaatttt-ggatttcattactcactagcacttattctca 102  Q
    |||||||||||  ||||||||| || |||||||||||| ||||||||||| |  ||||||||||||||||    
T  38637465 ctttttacattataactctattttggagtttcaatttttggatttcattattttctagcacttattctca 38637534  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 38452281 - 38452240
Alignment:
Q  105 acatcttaacttgttacatattattttatttatcttattatt 146  Q
    ||||||||||||||||||  |||||| |||||||||||||||    
T  38452281 acatcttaacttgttacactttatttcatttatcttattatt 38452240  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 44476027 - 44476081
Alignment:
Q  202 acatcttattcacattttc-gttttgttgagacttcaaaacattcatcatgattc 255  Q
    |||||||||||| |||||| |||| |||||||||||||| |||||||||| ||||    
T  44476027 acatcttattcatattttccgtttagttgagacttcaaatcattcatcattattc 44476081  T

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