View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_high_12 (Length: 252)
Name: NF15255_high_12
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23982972 - 23983207
Alignment:
| Q |
1 |
cattattgttacatctttggcagctcccattacagttacatatcagacatttattttgttttgattaataactctgatgttaacattctttatgtgcaca |
100 |
Q |
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| T |
23982972 |
cattattgttacatctatggcagctcccattacagttacatatcagacatttattttgttttgattaataacactgatgttaacattctttatgtgcaca |
23983071 |
T |
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| Q |
101 |
caaattgggtagacaactctttttctatttactcgttatgtataatttattccttgtacatatatatgtcagtctcgaccggtctcaagcatagttgtac |
200 |
Q |
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| T |
23983072 |
caaattgggtagacaactctttttctatttactcgttatgtataatttattccttgtacatatatatgtcagtctcgaccggtctcaagcatagttgtac |
23983171 |
T |
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| Q |
201 |
tctagacacattttcaatctaaagtgtatgcctatt |
236 |
Q |
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| T |
23983172 |
tctagacacattttcaatctaaagtgtatgcctatt |
23983207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 23965675 - 23965818
Alignment:
| Q |
9 |
ttacatctttggcagctcccattacagttacatatcagacatttattttgttttgatt--aataactctgatgtt--aacattctttatgtgcacacaaa |
104 |
Q |
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| T |
23965675 |
ttacatctttggcaaaacccattgcagttacgtatcagacattcatattgttttgatttatataactctgatgtttgaacattcattatatgcacacaaa |
23965774 |
T |
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| Q |
105 |
ttgggtagacaactctttttctatttactcgttatgtataattta |
149 |
Q |
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| T |
23965775 |
ttggatagactact-tttttctatttactcattacttataattta |
23965818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 23989678 - 23989729
Alignment:
| Q |
87 |
tctttatgtgcacacaaattgggtagacaactctttttctatttactcgtta |
138 |
Q |
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| T |
23989678 |
tctttatatgcacacaaattgggtaaacagctctttttctatttactagtta |
23989729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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