View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15255_high_6 (Length: 443)

Name: NF15255_high_6
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15255_high_6
NF15255_high_6
[»] chr2 (5 HSPs)
chr2 (19-424)||(18902730-18903135)
chr2 (63-210)||(6788440-6788588)
chr2 (139-205)||(18903200-18903268)
chr2 (89-200)||(5708993-5709105)
chr2 (167-207)||(39273410-39273450)
[»] chr3 (2 HSPs)
chr3 (79-210)||(30843774-30843906)
chr3 (58-98)||(45906813-45906853)
[»] chr8 (2 HSPs)
chr8 (48-210)||(21145574-21145739)
chr8 (50-123)||(21601999-21602072)
[»] chr1 (4 HSPs)
chr1 (48-210)||(6727935-6728098)
chr1 (167-210)||(31134783-31134826)
chr1 (167-210)||(34177544-34177587)
chr1 (33-117)||(32669845-32669929)
[»] chr7 (3 HSPs)
chr7 (139-209)||(11459042-11459112)
chr7 (129-210)||(22935147-22935229)
chr7 (92-195)||(5362263-5362367)
[»] chr6 (4 HSPs)
chr6 (90-210)||(10219541-10219662)
chr6 (82-206)||(33806658-33806783)
chr6 (139-210)||(19264753-19264823)
chr6 (79-130)||(26369091-26369142)
[»] chr4 (5 HSPs)
chr4 (82-210)||(12034386-12034515)
chr4 (139-206)||(12922174-12922241)
chr4 (138-208)||(35763064-35763134)
chr4 (79-115)||(972077-972113)
chr4 (139-195)||(12922464-12922520)


Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 18903135 - 18902730
Alignment:
Q  19 atatcagtccctcgatatacttactttcgtatcagtccgtataagaaaatagttactatcagcattgagggattattttagcatcagggactattttgac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  18903135 atatcagtccctcgatatacttactttcgtatcagtccgtataagaaaatagttactgtcagcattgagggattattttagaatcagggactattttgac 18903036  T
Q  119 caacacagcacacaatcattactattttagaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaatgactgtttgcac 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  18903035 caacacagcacacaatcagtactattttagaatttcggtacattgaaagactatcgtggctaatcattacacattcagggacgaaaatgactatttgcac 18902936  T
Q  219 atattttttcttattctacttatggaggtaccaagaggtgagggatggacttgggtggaataaatatagtgctttaatgattttctaatgtgacagacat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18902935 atattttttcttattctacttatggaggtaccaagaggtgagggatggacttgggtggaataaatatagtgctttaatgattttctaatgtgacagacat 18902836  T
Q  319 tttgaaacaatgttttaattgcaattgtgggtactggttacattgaggataaatacaactgatgctgcaattatggagtatttctaataaatgttatttg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18902835 tttgaaacaatgttttaattgcaattgtgggtactggttacattgaggataaatacaactgatgctgcaattagggagtatttctaataaatgttatttg 18902736  T
Q  419 gtgata 424  Q
    ||||||    
T  18902735 gtgata 18902730  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 6788440 - 6788588
Alignment:
Q  63 gaaaatagttactatcagcattgagggattattttagcatcagggactattttgaccaacacagcacacaatca-ttactattttagaatttcggtacat 161  Q
    ||||||||||||| | || ||||| |||||||||||||||||| ||||||| |||| |||| ||  ||||||||   ||||||||| ||||| | |||||    
T  6788440 gaaaatagttactgtgagtattgaaggattattttagcatcagagactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacat 6788539  T
Q  162 tggaagactatcgtggctactcattacacattcagggacgaaaatgact 210  Q
    || | ||||||  || ||| |  ||||||||| | ||| ||||||||||    
T  6788540 tgaatgactattatgactatttgttacacatttaaggatgaaaatgact 6788588  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 18903200 - 18903268
Alignment:
Q  139 actattttagaatttcggtacattggaagactatcgtggctactcatt--acacattcagggacgaaaa 205  Q
    ||||||||||||||||| ||||||| | |||||| ||| |||||| ||  ||||||||| |||||||||    
T  18903200 actattttagaatttcgatacattgaatgactattgtgactactcgttacacacattcaaggacgaaaa 18903268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 5709105 - 5708993
Alignment:
Q  89 gattattttagcatcagggactattttgaccaacacagcacacaatc-attactattttagaatttcggtacattggaagactatcgtggctactcatta 187  Q
    |||||||||||| |||| ||||||||||||||||| |   ||||||| || |||||||| ||||   | ||||||| | |||||| |||  || ||||||    
T  5709105 gattattttagcctcagagactattttgaccaacaaaatgcacaatcaatgactattttggaatcctgatacattgaaggactattgtgattaatcatta 5709006  T
Q  188 cacattcagggac 200  Q
    |||||||| ||||    
T  5709005 cacattcaaggac 5708993  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 39273410 - 39273450
Alignment:
Q  167 gactatcgtggctactcattacacattcagggacgaaaatg 207  Q
    |||||| ||||||||||||||||||||||| ||| ||||||    
T  39273410 gactattgtggctactcattacacattcagagaccaaaatg 39273450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 30843774 - 30843906
Alignment:
Q  79 agcattgagggattattttagcatcagggactattttgaccaacacagcacacaatca-ttactattttagaatttcggtacattggaagactatcgtgg 177  Q
    ||||||||| |||||||||||| ||||||||||||||||  |||| ||  ||||||||   |||||||| |||||| | ||||||   ||||||| |||     
T  30843774 agcattgagagattattttagcgtcagggactattttgattaacaaagtgcacaatcagagactattttggaattttgatacattaagagactattgtga 30843873  T
Q  178 ctactcattacacattcagggacgaaaatgact 210  Q
    |||||||||||||||||||| || ||| |||||    
T  30843874 ctactcattacacattcaggaaccaaagtgact 30843906  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 45906813 - 45906853
Alignment:
Q  58 tataagaaaatagttactatcagcattgagggattatttta 98  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  45906813 tataagaaaatagttactgttagcattgagggtttatttta 45906853  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 21145574 - 21145739
Alignment:
Q  48 tatcagtccgtataagaaaatagttactatcagcattgagggattattttagcatcagggactattttgaccaacacagcacacaatc-attactatttt 146  Q
    ||||||||| ||||  |||| ||||| | |||||||||||||| ||||||| |||||| |||||||||||| |||  | | || ||||    ||||||||    
T  21145574 tatcagtccctatataaaaagagttaatgtcagcattgagggactattttaacatcagagactattttgactaacgaaacgcataatctgagactatttt 21145673  T
Q  147 agaatttcggtacattggaagac--tatcgtggctactcattacacattcagggacgaaaatgact 210  Q
     |||||||| ||| |||  ||||  ||| |||||||||| ||||||||||||| || |||||||||    
T  21145674 ggaatttcgatacgttgatagactatattgtggctactcgttacacattcaggaaccaaaatgact 21145739  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 21602072 - 21601999
Alignment:
Q  50 tcagtccgtataagaaaatagttactatcagcattgagggattattttagcatcagggactattttgaccaaca 123  Q
    ||||||| |||| ||||| ||||| ||| |  ||||||||||||||||||  |||||||||| |||||| ||||    
T  21602072 tcagtccctatatgaaaagagttattatgaatattgagggattattttagtgtcagggactactttgactaaca 21601999  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 6727935 - 6728098
Alignment:
Q  48 tatcagtccgtataagaaaatagttactatcagcattgagggattattttagcatcagggactattttgaccaacacagcacacaatc-attactatttt 146  Q
    ||||||||| |||||||||| ||||| | ||| |||||| | | |||||||   |||  |||||||||||| |||| ||  ||||||  |  ||||||||    
T  6727935 tatcagtccttataagaaaagagttagtgtcaacattgaagcactattttaaagtcaaagactattttgactaacatagtgcacaatggaagactatttt 6728034  T
Q  147 agaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaatgact 210  Q
     |||||| | | ||||| | |||||| ||| ||| || ||||||||||||||||||||||||||    
T  6728035 ggaattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaatgact 6728098  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 31134783 - 31134826
Alignment:
Q  167 gactatcgtggctactcattacacattcagggacgaaaatgact 210  Q
    |||||||||| |||||| |||||||||||||||| |||||||||    
T  31134783 gactatcgtgactactcgttacacattcagggaccaaaatgact 31134826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 34177544 - 34177587
Alignment:
Q  167 gactatcgtggctactcattacacattcagggacgaaaatgact 210  Q
    |||||| || |||||||||||||||||||||||| |||||||||    
T  34177544 gactattgtagctactcattacacattcagggaccaaaatgact 34177587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 32669929 - 32669845
Alignment:
Q  33 atatacttactttcgtatcagtccgtataagaaaatagttactatcagcattgagggattattttagcatcagggactattttga 117  Q
    ||||||||||| || |||  |||| |||| ||||| ||||  | ||| |||||||||||| ||||| |||||||||| |||||||    
T  32669929 atatacttactgtcatatttgtccctatatgaaaagagttcatgtcaacattgagggattgttttaacatcagggaccattttga 32669845  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 11459042 - 11459112
Alignment:
Q  139 actattttagaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaatgac 209  Q
    ||||||||  ||||||  ||||||||| |||||| | |||||||| || ||||||||||||||||||||||    
T  11459042 actattttgtaatttctctacattggaggactattgcggctactcgttgcacattcagggacgaaaatgac 11459112  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 22935229 - 22935147
Alignment:
Q  129 cacaatcat-tactattttagaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaatgact 210  Q
    ||||||||| |||||||||||||||||| |||| |  ||  |||| ||| |||||||||||| ||| ||| ||||||||||||    
T  22935229 cacaatcatatactattttagaatttcgatacactaaaaacctattgtgtctactcattacaaatttaggaacgaaaatgact 22935147  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 5362367 - 5362263
Alignment:
Q  92 tattttagcatcagggactattttgaccaacacagcacacaatcat-tactattttagaatttcggtacattggaagactatcgtggctactcattacac 190  Q
    |||||||  |||||||||||||||||| |||| |  ||||||||||  ||||||||  ||||||| |||| |   ||||| | ||||||||| |||||||    
T  5362367 tattttaatatcagggactattttgactaacaaattacacaatcatgaactattttgaaatttcgatacactaagagactgttgtggctacttattacac 5362268  T
Q  191 attca 195  Q
    |||||    
T  5362267 attca 5362263  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 10219662 - 10219541
Alignment:
Q  90 attattttagcatcagggactattttgaccaacacagcacacaatcatta-ctattttagaatttcggtacattggaagactatcgtggctactcattac 188  Q
    ||||||||| | |||| |||||||||||| |||| ||  ||||||||  | |||||||  |||||||  |||||    |||||| |||||||||| ||||    
T  10219662 attattttaacgtcagagactattttgactaacaaagtgcacaatcaggaactattttgaaatttcgacacattaagggactattgtggctactcgttac 10219563  T
Q  189 acattcagggacgaaaatgact 210  Q
    |||||||||||| |||||||||    
T  10219562 acattcagggaccaaaatgact 10219541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 33806783 - 33806658
Alignment:
Q  82 attgagggattattttagcatcagggactattttgaccaacacagcacacaatcatt-actattttagaatttcggtacattggaagactatcgtggcta 180  Q
    ||||| ||| ||||||| | | || |||||||||||| |||| || ||| ||||| | ||||||||||||||||| ||||||  | || ||| ||| |||    
T  33806783 attgaaggaatattttaacgttagagactattttgactaacaaagtacataatcaatgactattttagaatttcgatacattaaaggattattgtgacta 33806684  T
Q  181 ctcattacacattcagggacgaaaat 206  Q
    ||| ||||||||||| |||| |||||    
T  33806683 ctccttacacattcatggactaaaat 33806658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 19264753 - 19264823
Alignment:
Q  139 actattttagaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaatgact 210  Q
    ||||||||| ||||||| |||||| || |||||| ||| |||||| ||||||||||| ||||| ||||||||    
T  19264753 actattttaaaatttcgatacattaga-gactattgtgactactcgttacacattcaaggacgtaaatgact 19264823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 26369091 - 26369142
Alignment:
Q  79 agcattgagggattattttagcatcagggactattttgaccaacacagcaca 130  Q
    ||||||||| |||||||||||||||| | ||||||||||| |||| ||||||    
T  26369091 agcattgagagattattttagcatcaagaactattttgactaacatagcaca 26369142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 12034515 - 12034386
Alignment:
Q  82 attgagggattattttagcatcagggactattttgaccaacacagcacacaatcatt-actattttagaatttcggtacattggaagactatcgtggcta 180  Q
    ||||| ||||||||||||  |||| |||||||||||| |||| || | |||||||   ||||||||  ||||| | |||||||   |||||| ||| |||    
T  12034515 attgaaggattattttagtgtcagagactattttgactaacaaagtatacaatcagagactattttgcaattttgatacattgagggactattgtgacta 12034416  T
Q  181 ctcattacacattcagggacgaaaatgact 210  Q
    ||| ||| |||||||||||| |||||||||    
T  12034415 ctcgttatacattcagggaccaaaatgact 12034386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 12922241 - 12922174
Alignment:
Q  139 actattttagaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaat 206  Q
    ||||||||  ||||||| ||||||| || ||||| ||| ||||| ||||||||||||||||| |||||    
T  12922241 actattttgaaatttcgatacattgaaatactattgtgactacttattacacattcagggaccaaaat 12922174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 35763134 - 35763064
Alignment:
Q  138 tactattttagaatttcggtacattggaagactatcgtggctactcattacacattcagggacgaaaatga 208  Q
    ||||||||| |||||| | ||| || || |||||| ||| |||||| |||||||||||| |||||||||||    
T  35763134 tactatttttgaattttgatacgttcgatgactattgtgactactcgttacacattcagagacgaaaatga 35763064  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 972077 - 972113
Alignment:
Q  79 agcattgagggattattttagcatcagggactatttt 115  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  972077 agcattgagagattattttagcatcacggactatttt 972113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 12922464 - 12922520
Alignment:
Q  139 actattttagaatttcggtacattggaagactatcgtggctactcattacacattca 195  Q
    ||||||||| ||||| | ||||||  |||| |||||||||||||||||||| |||||    
T  12922464 actattttaaaattttgatacattaaaagattatcgtggctactcattacaaattca 12922520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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