View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_low_1 (Length: 799)
Name: NF15255_low_1
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 10 - 781
Target Start/End: Complemental strand, 43021434 - 43020662
Alignment:
| Q |
10 |
aaaatccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttg |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43021434 |
aaaatccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttg |
43021335 |
T |
|
| Q |
110 |
tggaagaatctaaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43021334 |
tggaagaatctaaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggacc |
43021235 |
T |
|
| Q |
210 |
aaatctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatccaaaatcttccataaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021234 |
aaatctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaaatcttccataaaa |
43021135 |
T |
|
| Q |
310 |
gtataataactgaatatcaccttttttaggcctt-gtttaaattttgaatacagtgtgaaaaggtatattttcaatttcaaattaaaccaatcatgtaat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021134 |
gtataataactgaatatcaccttttttaggccttagtttaaattttgaatacagtgttaaaaggtatattttcaatttcaaattaaaccaatcatgtaat |
43021035 |
T |
|
| Q |
409 |
ccgatcctattgctgtttattttaattaattattacatcaattcttaagacttaagattcttcaaccatttgattgtaagagatccagcaaattttatag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
43021034 |
ccgatcctattgctgtttattttaattaattattacatcaattcttaagacttaagattcttcaaccatttgattgtaagagatccagcaaagtttatag |
43020935 |
T |
|
| Q |
509 |
gtattgtttcacatgatcatgcaaactatatgtgcaaattactaatatttaattaatttagatatataaaatagtgtgatatgtctttttcatgcactca |
608 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43020934 |
gtattgtttcacatgatcatccaaactatatgtgcaaatcactaatatttaattaatttagatatataaaatagtgtgatatgtctttttcatgcactca |
43020835 |
T |
|
| Q |
609 |
gggaagataggagttcgacgtatacagtaattttaaaagaggtagtacactgacatatataaaaagaacctaaaaagtttattcttgtcttctatttctc |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43020834 |
gggaagataggagttcgacgtatacagtaattttaaaagaggtagtacactgacatatataaaaagaacctaaaaagtttattcttgtcttctatttctc |
43020735 |
T |
|
| Q |
709 |
tattcaatattccattgtctttaataattattcccttcagaaactacctatgaagttaccccctcccccgttt |
781 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43020734 |
tattcaatattccattgtctttaatagttattcccttcagaaactacctatgaagttaccccctcccccgttt |
43020662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
| Q |
156 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
255 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | |||| |
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|
| T |
13675644 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat |
13675743 |
T |
|
| Q |
256 |
gctatctctggctatatatgcccccttcaaaagtatccaaa |
296 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
13675744 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
13675784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 156 - 296
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
| Q |
156 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
255 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | |||| |
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|
| T |
19965075 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat |
19964976 |
T |
|
| Q |
256 |
gctatctctggctatatatgcccccttcaaaagtatccaaa |
296 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19964975 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
19964935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
| Q |
156 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
255 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | |||| |
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|
| T |
50805826 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat |
50805727 |
T |
|
| Q |
256 |
gct |
258 |
Q |
| |
|
||| |
|
|
| T |
50805726 |
gct |
50805724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
| Q |
156 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
255 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | |||| |
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| T |
50870051 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat |
50870150 |
T |
|
| Q |
256 |
gct |
258 |
Q |
| |
|
||| |
|
|
| T |
50870151 |
gct |
50870153 |
T |
|
Back To:
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