View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_low_16 (Length: 245)
Name: NF15255_low_16
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_low_16 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30183013 - 30183252
Alignment:
| Q |
1 |
tcatcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30183013 |
tcatcatttccaagttttcaatctgtttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttctttttaattctgtaa |
30183112 |
T |
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| Q |
101 |
accaaaacaacaaagcaaaaatggaataaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30183113 |
accaaaacaacaaagcaaaaatggaataaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaatttactgtaatgaaag |
30183212 |
T |
|
| Q |
201 |
tgaaaatagatagatatggttcatgaccttaccgcctttg |
240 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
30183213 |
tgaaaatagatagatagggttcatgaccttaccgcctttg |
30183252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 44430944 - 44431074
Alignment:
| Q |
1 |
tcatcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44430944 |
tcatcatttccaagttttcaatctgtttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaa |
44431043 |
T |
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| Q |
101 |
accaaaacaacaaagcaaaaatggaataaaa |
131 |
Q |
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| T |
44431044 |
accaaaacaacaaagcaaaaatggaataaaa |
44431074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44441366 - 44441471
Alignment:
| Q |
1 |
tcatcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaa |
100 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44441366 |
tcatcatttccaagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaa |
44441465 |
T |
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| Q |
101 |
accaaa |
106 |
Q |
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|||||| |
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| T |
44441466 |
accaaa |
44441471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 44431114 - 44431201
Alignment:
| Q |
128 |
aaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
44431114 |
aaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagata |
44431201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 44441566 - 44441649
Alignment:
| Q |
132 |
cctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagata |
216 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
44441566 |
cctatttgcataattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagata |
44441649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 6179 - 6284
Alignment:
| Q |
1 |
tcatcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaa |
100 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6179 |
tcatcatttccaagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaa |
6278 |
T |
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| Q |
101 |
accaaa |
106 |
Q |
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|||||| |
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| T |
6279 |
accaaa |
6284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 6379 - 6462
Alignment:
| Q |
132 |
cctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagata |
216 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
6379 |
cctatttgcataattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagata |
6462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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