View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_low_18 (Length: 225)
Name: NF15255_low_18
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 6489636 - 6489486
Alignment:
| Q |
58 |
atgtatcggcagcctttatgaatgaattcaccttctatatatttgactagcctannnnnnnn-atacatcacttagcttttaagaattcactaatattct |
156 |
Q |
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| T |
6489636 |
atgtatcggcagcctttatgaatgaattcaccttttatatatttgactagcctatttttttttatacatcactt-gctttcaagaattcaataatattct |
6489538 |
T |
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| Q |
157 |
ttgaaaatccacgatgtccatcagcacaatcgattatgttctccctaacaaa |
208 |
Q |
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| T |
6489537 |
ttgaaaatccacgttgtccatcaccacaatcggttatgctctccctaacaaa |
6489486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 6479921 - 6480066
Alignment:
| Q |
62 |
atcggcagcctttatgaatgaattcaccttctatatatttgactagcctannnnnnnnatacatcacttagcttttaagaattcactaatattctttgaa |
161 |
Q |
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| T |
6479921 |
atcggcagcctttatgaatgaattcatcttctatatatttaactaccctattttttt-atacatcacttagctttcaagaattcaataatattctttgaa |
6480019 |
T |
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| Q |
162 |
aatccacgatgtccatcagcacaatcgattatgttctccctaacaaa |
208 |
Q |
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| T |
6480020 |
aatccacaatgtccatcaccacaatcgattacgctctccctaacaaa |
6480066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 6489699 - 6489658
Alignment:
| Q |
16 |
agggttagtggaaaggttatatatttggtcatggttctgttt |
57 |
Q |
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| T |
6489699 |
agggttagtggaaaggttatatatttggtcatggttctcttt |
6489658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 51946714 - 51946786
Alignment:
| Q |
120 |
atacatcacttagcttttaagaattcactaatattctttgaaaatccacgatgtccatcagcacaatcgatta |
192 |
Q |
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| T |
51946714 |
atacatcacttagctctcaagaattcaataatattcattgaaaatccacgatgtccatcaccacaatcgatta |
51946786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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