View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15255_low_3 (Length: 674)

Name: NF15255_low_3
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15255_low_3
NF15255_low_3
[»] chr2 (1 HSPs)
chr2 (19-674)||(37492136-37492791)


Alignment Details
Target: chr2 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 19 - 674
Target Start/End: Original strand, 37492136 - 37492791
Alignment:
Q  19 atgtgcatactgcatagtggttaagatcattctgtttacatttaatttcaaattagaatgatgctactcttatttttgtaatgatgctttgatttctttg 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37492136 atgtgcatactgcatagtggttaaaatcattctgtttacatttaatttcaaatcagaatgatgctactcttatttttgtaatgatgctttgatttctttg 37492235  T
Q  119 gttgttttacttgaaatggcaaaggataaggagcaaagcagttcagattacagaagctgtgttccgtccaatccgatccattctgatccaatccattcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37492236 gttgttttacttgaaatggcaaaggataaggagcaaagcagttcagattacagaagctgtgttccgtccaatccgatccattccgatccaatccattcca 37492335  T
Q  219 tttcatttcgtttcattccatcaggtagctgtgttaagaattttgtttagttatagtatgaataatatcagtgatatttataataggagcatttatggaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37492336 tttcatttcgtttcattccatcaggtagctgtgttaagagttttgtttagttatagtatgaataacatcagtgatatttataataggagcatttatggaa 37492435  T
Q  319 gctctatgtgagttttgtggggttgcaagagctgtggtttactgcaagcctgattccgctcgtctatgcttgcattgtgatgggattgtccactctgcaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37492436 gctctatgtgagttttgtggggttgcaagagctgtggtttactgcaagcctgattccgctcgtctatgcttgcattgtgatgggaatgtccactctgcaa 37492535  T
Q  419 attctctgtctcgcaggcatccccgctcgctcctctgcgataagtgtaatttcgactcagcaatcgtgcgctgcgtcgatcataaattgtctctctgtca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37492536 attctctgtctcgcaggcatccccgctcgctcctctgcgataagtgtaatttcgactcagcaatcgtgcgctgcgtcgatcataaattgtctctctgtca 37492635  T
Q  519 agtttgtgattggaatacaaatgactgttttgtattgggacataaacatgtgctactcactttctacgctggttgtccctctgtggcagagttatctaag 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  37492636 agtttgtgattggaatacaaatgactgttttgtattgggacataaacatgtgctactcactttctacactggttgtccctctttggcagagttatctaag 37492735  T
Q  619 atttggccacatttggttgatgcaaattcatcaaatgctgcttgggaatcccctag 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37492736 atttggccacatttggttgatgcaaattcatcaaatgctgcttgggaatcacctag 37492791  T

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