View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_low_4 (Length: 520)
Name: NF15255_low_4
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 14105156 - 14105539
Alignment:
| Q |
14 |
caaaggtatataaatgatcgaaaatgaaaggactaacgcagctgagacgtgatcttggtaattgaaaaggtgtctctcttgtcttgtgataaccaaaaaa |
113 |
Q |
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| T |
14105156 |
caaaagtatataaatgatcgaaaatgaaaggactaacgcagctgagacgtgatcttggtaattgaaaaggtgtctctcttgtcttgtgataaccaaaaaa |
14105255 |
T |
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| Q |
114 |
gaaatcccacatcctagattttggtgtttttcagaatgttgttttttacttgaaatcccacatcggaactttgtgaagcaaaggatagtcaaagtggcta |
213 |
Q |
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| T |
14105256 |
gaaatcccacatcctagattttggtgtttttcagaatgttgttttttacttgaaatcccacatcggaactttgtgaagcaaaggatagtcaaagtggcta |
14105355 |
T |
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| Q |
214 |
taaataagtaacttagaatgtttgaaacaatttggaaatatgttaagtagtatagtgtatacttcctatatggctttgaacattttggatcacttattta |
313 |
Q |
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| T |
14105356 |
taaataagtaacttagaatgtttgaaacaatttggaaatatgttaagtagtatagtgtatacttcctttatggctttgaacattttggatcacttattta |
14105455 |
T |
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| Q |
314 |
ctgttaatatttagtattgtagtgatctgcaatgtttatttccataaagtaagttataaacacttcctaaaccagagattaaca |
397 |
Q |
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| T |
14105456 |
ctgttaatatttagtattgtagtgatctgcaatgtttatttccataaagtaagttataaacacttcctaaaccagagattaaca |
14105539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 14105585 - 14105646
Alignment:
| Q |
442 |
cattacttgaaaattgtatacattattgatttgaatcattgcttattacatcatgcgtttct |
503 |
Q |
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| T |
14105585 |
cattacttgaaaattgtatccattattgatttgaatcattgcttattacatcatgcgcttct |
14105646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 14092667 - 14092731
Alignment:
| Q |
169 |
tcccacatcggaactttgtgaagcaaaggatagtcaaagtggctataaataagtaacttagaatg |
233 |
Q |
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| T |
14092667 |
tcccacatcgaaacattgggaaacaaaggagagttgaagtggctataaataagaagcttagaatg |
14092731 |
T |
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