View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_low_5 (Length: 462)
Name: NF15255_low_5
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 3856724 - 3856302
Alignment:
| Q |
19 |
agaccaccaatccaaaacggagaaatacaaattacaccgagaaatccagaaacagcaccaatgcaggtttatcaaacgtaaagttggccatgagtaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856724 |
agaccaccaatccaaaacggagaaatacaaattacaccgagaaatccagaaacagcaccaatgcaggtttatcaaacgtaaagttggccatgagtaaata |
3856625 |
T |
|
| Q |
119 |
ctggccttggcaaataaagtccaacagaggttaaagtttgcccttggctcttgtttatggtcatagaaaatgaaagaaccagtggaaactgacgcctctc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3856624 |
ctggccttggcaaataaagtccaacagaggttaaagtttgcccttggctcttgtttatggtcatagcaaatgaaagaaccagtggaaactgacgcctctc |
3856525 |
T |
|
| Q |
219 |
aaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856524 |
aaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatc |
3856425 |
T |
|
| Q |
319 |
acatttttccccaaagagacaataatcaaacgcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttca |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3856424 |
acatttttccccaaagagacaataatcaaacgcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacatgaactccaaccttca |
3856325 |
T |
|
| Q |
419 |
aacataattattattttttctaa |
441 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
3856324 |
aacataattattattttttctaa |
3856302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 418
Target Start/End: Complemental strand, 18046601 - 18046333
Alignment:
| Q |
150 |
taaagtttgcccttggctcttgtttatggtcatagaaaatgaaagaaccagtggaaactgacgcctctcaaacgtaatggaaacattagcaccagaaggg |
249 |
Q |
| |
|
||||||||| || || || || ||||||||||| | ||| || ||||||| ||||||||| |||||||| || |||| || ||||| |||| ||| || |
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| T |
18046601 |
taaagtttggccctgacttttatttatggtcatcgcaaaagagagaaccaatggaaactgccgcctctcgaaggtaacagagacatttgcacaagatgga |
18046502 |
T |
|
| Q |
250 |
atcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaac |
349 |
Q |
| |
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|| |||||||||||||| ||||| |||||||||| ||| | |||||||| | | |||||| ||||||||||| || | ||| |||| |||||| |
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| T |
18046501 |
ataagattcatccgaggtatgtaaacaacctcacagttatgggtgccaccaatctcccttgcacatatcacattttttccaagagaaacaacggtcaaac |
18046402 |
T |
|
| Q |
350 |
gcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttca |
418 |
Q |
| |
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||| || || || ||| ||| ||||||||||| || ||||||||||| | |||||| |||||||||| |
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|
| T |
18046401 |
acgtgccgttacaaagatgagaagcttgatcaacattccgaagcaacataataggaacaccaaccttca |
18046333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 93 - 425
Target Start/End: Complemental strand, 46471682 - 46471350
Alignment:
| Q |
93 |
aacgtaaagttggccatgagtaaatactggccttggcaaataaagtccaacagaggttaaagtttgcccttggctcttgtttatggtcatagaaaatgaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
46471682 |
aacgtaaagttggccatgagtaaatactggccttggcaaataaagtccaacagaggttaaagtttgaccttggctcttgtttatggtcatagcaaatgaa |
46471583 |
T |
|
| Q |
193 |
agaaccagtggaaactgacgcctctcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtg |
292 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
46471582 |
agaaccaatggaaactgacacctctcaaaagtaatggaaacattagcaccagaaggaatcagattcatccgaggaatgtaggaaacctcaccagcatgtg |
46471483 |
T |
|
| Q |
293 |
caccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaacgcgttccattgcagagaccagatgcttgatcaacgttgcgaag |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46471482 |
taccaccaataacacgtgcacaaatcacatttttccccaaggagacaataatcaaacgtgttccattgcagagaccagatgcttgatcaacgttgcgaag |
46471383 |
T |
|
| Q |
393 |
caacatgacaggaactccaaccttcaaacataa |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
46471382 |
caacatgacaggaactccaaccttcaaacataa |
46471350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 46472015 - 46471950
Alignment:
| Q |
19 |
agaccaccaatccaaaacggagaaatacaaattacaccgagaaatccagaaacagcaccaatgcag |
84 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
46472015 |
agaccacagatccaaaacggagaaatacaaattacaccaagaaatccagaaacagcatcaatgcag |
46471950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 419
Target Start/End: Complemental strand, 33446335 - 33446133
Alignment:
| Q |
217 |
tcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaa |
316 |
Q |
| |
|
||||| ||||| || ||||| |||||||| || || |||||||||||||| |||||| |||| || ||| |||| ||||||||||| ||| ||||| | |
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|
| T |
33446335 |
tcaaatgtaatagacacattggcaccagatggtatgagattcatccgaggtatgtaggcaacttcgccatcatgcaaaccaccaataatacgcgcacata |
33446236 |
T |
|
| Q |
317 |
tcacatttttccccaaagagacaataatcaaacgcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaacctt |
416 |
Q |
| |
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| |||||||| ||||| || | | | | ||||| || |||||||| ||||||| | |||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
33446235 |
tgacatttttgcccaatgaaatgacagttaaacgggtaccattgcacagaccagccgattgatcaacgttgcgaagcaacataacaggaacaccaacctt |
33446136 |
T |
|
| Q |
417 |
caa |
419 |
Q |
| |
|
||| |
|
|
| T |
33446135 |
caa |
33446133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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