View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15255_low_7 (Length: 417)

Name: NF15255_low_7
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15255_low_7
NF15255_low_7
[»] chr1 (1 HSPs)
chr1 (16-404)||(19061348-19061752)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 19061752 - 19061348
Alignment:
Q  16 aagagggtaatcaattttttgagacttaaaataattaattatgaacgacttttcttcnnnnnnntaattaatgacgataaaaactattagatcataaaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||| ||||||||    
T  19061752 aagagggtaatcaattttttgagacttaaaataattaattatgaacgacttttcttcaaaaaaataatgaatgacgataaaaactattagaccataaaat 19061653  T
Q  116 ttatacttgactgagtggtgttaaatacaaataaaaatagattttctaaaaccaaaaaagtaatacgtagataaattagcagcaattttttaaagaaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19061652 ttatacttgactgagtggtgttaaatacaaataaaaatatattttctaaaagcaaaaaagtaatacgtagataaattagcaccaattttttaaagaaatt 19061553  T
Q  216 tgaaaaactccccttttgcatcctta-------------ccatcttcgatttttcacatattcaatgaatcgatctcaaaaatattgatctcattgttta 302  Q
    ||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  19061552 tgaaaaactccccttttgcatccttatcatcaagtacgtccatcttcgatttttcacatattcaatgaatcaatctcaaaaatgttgatctcattgttta 19061453  T
Q  303 acaacaata---atgataactaatgagggcgaattaaacttaaaaatactttaaagcaaagaaaacattagagaagacgaatatgaatgaaatacaacag 399  Q
    |||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19061452 acaacaataatgatgataactaatgggggcgaattaaacttaaaaatactttaaagcaaagaaaacattagagaagacgaatatgaatgaaatacaacag 19061353  T
Q  400 ttttg 404  Q
    |||||    
T  19061352 ttttg 19061348  T

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