View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15255_low_8 (Length: 370)
Name: NF15255_low_8
Description: NF15255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15255_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 36004753 - 36005097
Alignment:
| Q |
1 |
aagccttctcaaaatcgacatttagtaacatgcatttatggttcctacgctttgccaaattgataactctactactatcttagaaa-taagagttattta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
36004753 |
aagccttctcaaaatcgacatttagtaacatgcatttatgattcctacgctttgccaaattgataactctacta---tcttagaaaataagagttattta |
36004849 |
T |
|
| Q |
100 |
atcttcccagctaagtgccgaaatgcaacatctactgcagcactagacaagttgagaaaatcctaagaaaactaagtgctccaaggtcttgtggcttgtg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36004850 |
atcttcccagctaagtgccgaaatgcaacatctactgcagcactagacaagttgagaaaatcctaagaaaactaagtgctccaaggtcttgtggcttgtg |
36004949 |
T |
|
| Q |
200 |
caatgttataacatatgtgaccgctgttattatgtgtgggtgtcaaaggatgtatgtcataaatggact---------gccgagattagctaaccctgga |
290 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
36004950 |
caatgttataacatatgtgaccaccgttattatgtgtgggtgtcaaaagatgtatgtcataaatggactgccgctatagccgagatgagctaaccctgga |
36005049 |
T |
|
| Q |
291 |
agaattgatataaggacactggcgctaatgaacaaattgcgtggtccct |
339 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36005050 |
agaattgatataaggacact-gcgctaatgaacaaattgcgtggtccct |
36005097 |
T |
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