View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15256_high_3 (Length: 295)
Name: NF15256_high_3
Description: NF15256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15256_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 23828949 - 23828673
Alignment:
| Q |
1 |
attaatgtgtttttgtgtgtagaaatggatacatactgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcga |
100 |
Q |
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| T |
23828949 |
attaatgtgtttttgtgtgtagaaaaggacacatactgaatctagcaagacatttgaggtattgaaatcgcggtattttccttttgtttcagcgttgcga |
23828850 |
T |
|
| Q |
101 |
agaaatttaaggcctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgttacatcattaatggtaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23828849 |
agaaatgtaaggcctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgttacatcattaatggtaa |
23828750 |
T |
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| Q |
201 |
tgttattaggcatgccttctccagtacaagtacaactgagaaaagatgaactgggaagcactcactgatgaacaagt |
277 |
Q |
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| T |
23828749 |
tgttattaggcatgccttctccagtacaagtacaagtgagaaaagatgaactgggaagcactcactgatgaacaagt |
23828673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 23819686 - 23819482
Alignment:
| Q |
14 |
tgtgtgtagaaatggatacatactgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcgaagaaatttaaggc |
113 |
Q |
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| T |
23819686 |
tgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcaccgtgaagaaatgcaaggc |
23819587 |
T |
|
| Q |
114 |
ctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgttacatcattaatggtaatgttattaggcat |
213 |
Q |
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| T |
23819586 |
ctttggcagcaccaacagcaaccttcaaccggaggctccaagaaagaggttgaaaatatgagcctcctgttacattattattggtaatattattaggcat |
23819487 |
T |
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| Q |
214 |
gcctt |
218 |
Q |
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||||| |
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| T |
23819486 |
gcctt |
23819482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 23832766 - 23832587
Alignment:
| Q |
31 |
acatactgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcgaagaaatttaaggcctttagcagcaccaaga |
130 |
Q |
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|||||| |||||||||||||||||||| || | |||||||||||| || ||||||||| || || |||||||| ||||||||| |||||||||||| |
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| T |
23832766 |
acatacggaatctagcaagacatttgaagtctggaaatcgcggtacattgcttttgtttgagtactgtgaagaaatgcaaggcctttggcagcaccaaga |
23832667 |
T |
|
| Q |
131 |
gcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgttacatcattaatggtaatgttattagg |
210 |
Q |
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| T |
23832666 |
gcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgttaaatcataattgataatattattagg |
23832587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 23824901 - 23824838
Alignment:
| Q |
119 |
gcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg |
182 |
Q |
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| T |
23824901 |
gcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg |
23824838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 41442358 - 41442287
Alignment:
| Q |
113 |
cctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt |
184 |
Q |
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| T |
41442358 |
cctttggcagcgtcaagagcaaccttcagacgaaggctccatgaaagaggttgaaaatatgatcctcctgtt |
41442287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 41448794 - 41448723
Alignment:
| Q |
113 |
cctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt |
184 |
Q |
| |
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| T |
41448794 |
cctttggcagcaccaagagcaaccttcagacagaggctccgagagagaggttgaaaatatgagccttctgtt |
41448723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 41459140 - 41459069
Alignment:
| Q |
113 |
cctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt |
184 |
Q |
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| T |
41459140 |
cctttggcagcgtcaagagcaaccttcagacggaggctccatgaaagaggttggaaatatgatcctcctgtt |
41459069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 34150371 - 34150303
Alignment:
| Q |
116 |
ttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt |
184 |
Q |
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||||||||| ||||||||||||||| || | |||||||||||| ||||||||||| || |||||||| |
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| T |
34150371 |
ttagcagcatcaagagcaaccttcattcggatgctccaagaaagtggttgaaaataagaagctcctgtt |
34150303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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