View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15256_high_4 (Length: 237)
Name: NF15256_high_4
Description: NF15256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15256_high_4 |
 | |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8103046 - 8103254
Alignment:
| Q |
1 |
ataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8103046 |
ataccatctggaaaccaacgttcaagtgttgagagtttggatgtttgattgcaacaaccaccacgtgagatttcagcccacgaattaatgaaataccatg |
8103145 |
T |
|
| Q |
101 |
ccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8103146 |
ccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtcacttgcacggcaaacaatggttgtgatgtgcc |
8103245 |
T |
|
| Q |
201 |
ttcgtagtt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
8103246 |
ttcgtagtt |
8103254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 40146927 - 40146733
Alignment:
| Q |
9 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
108 |
Q |
| |
|
||||||||| ||||| || ||| ||||||||||| ||||||||||||||||| | || |||| ||||| |||||||||||| ||||| || | |
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|
| T |
40146927 |
tggaaaccaacgttctagcgttatgagtttggatacttgattgcaacaaccac---gcgagattttcgcccatgaattaatgaaaagccatgtggactct |
40146831 |
T |
|
| Q |
109 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgta |
206 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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|
| T |
40146830 |
ccgtcaacaaccgcatggttaaatgtaaaaccaatgaagaagccgtcaactaactctgtcacttgcacagctaacaatggttgtgatgtgccttcgta |
40146733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 6501098 - 6501285
Alignment:
| Q |
19 |
cgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaa |
118 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||||| ||| | || |||| ||| || ||||| || | |
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|
| T |
6501098 |
cgttctagtgatgggagtttggatatttgattacaacaaccac---gtgaaatttcagcccaggaactgataaaatgccacatggactttccaccagtga |
6501194 |
T |
|
| Q |
119 |
ccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
209 |
Q |
| |
|
|||||||||| || |||| |||||||||| ||| ||||||||||||| |||||||| |||| |||||||| |||| ||||||||||||| |
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|
| T |
6501195 |
ccacatggttgaatctaaacccaataaagacaccgccaactaactctgtcacttgcactgcaagcaatggttttgatatgccttcgtagtt |
6501285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 11969610 - 11969686
Alignment:
| Q |
133 |
gtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
209 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| ||||| || |||| |||||| | |||||| ||||| ||||| |
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|
| T |
11969610 |
gtaaagccaatgaagatgccatcaactaactctgttacttggactgcaagcaatggctctgatgtcccttcatagtt |
11969686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7629191 - 7629397
Alignment:
| Q |
1 |
ataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatg |
100 |
Q |
| |
|
||||||| ||||||||| |||||| |||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| |
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|
| T |
7629191 |
ataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccaca |
7629290 |
T |
|
| Q |
101 |
ccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcc |
200 |
Q |
| |
|
| || |||| |||||||| |||||||| || || |||||||||||| |||||||||| ||| || ||||| || || |||||||||| ||| ||||| |
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|
| T |
7629291 |
cggactttccgtcaacaacaacatggttgaatgtgcaaccaataaagacaccgtcaactagctccgttacttgaacagccaacaatggttttgacgtgcc |
7629390 |
T |
|
| Q |
201 |
ttcgtag |
207 |
Q |
| |
|
||||||| |
|
|
| T |
7629391 |
ttcgtag |
7629397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 7655630 - 7655481
Alignment:
| Q |
60 |
accacgtgaaatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaact |
159 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||| | || ||| ||| | || |||||||| ||| |||| ||||| ||||||||||||||| |
|
|
| T |
7655630 |
accacgtgacatttcagcccacgaattgatgaaatgccacgtggactgtccgtcagctacgacatggttgaaattaaagccaatgaagatgccgtcaact |
7655531 |
T |
|
| Q |
160 |
aactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
209 |
Q |
| |
|
| ||| || ||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
7655530 |
agctccgtgacttgaacagccaacaatggttttgatgtgccttcgtagtt |
7655481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 7606806 - 7607014
Alignment:
| Q |
1 |
ataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatg |
100 |
Q |
| |
|
||||||| ||||||||| || || ||||||||| ||||||||||||||| | ||||| ||| ||||| ||||||||||| ||||| ||||||| ||| |
|
|
| T |
7606806 |
ataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccaca |
7606905 |
T |
|
| Q |
101 |
ccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcc |
200 |
Q |
| |
|
| || |||| ||||| || |||||||| || | ||||||| || || |||||||||| ||| || | ||| || || |||||||||| ||| ||||| |
|
|
| T |
7606906 |
cggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgcc |
7607005 |
T |
|
| Q |
201 |
ttcgtagtt |
209 |
Q |
| |
|
||| ||||| |
|
|
| T |
7607006 |
ttcatagtt |
7607014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 7637639 - 7637839
Alignment:
| Q |
3 |
accatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgcc |
102 |
Q |
| |
|
||||| ||||||||| || || ||||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | |
|
|
| T |
7637639 |
accatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacg |
7637738 |
T |
|
| Q |
103 |
gaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcctt |
202 |
Q |
| |
|
|| |||| ||||| || ||||||||||| | ||||||| || || |||||||||| ||| || ||||| || || |||||||||| ||||||||||| |
|
|
| T |
7637739 |
gactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgcctt |
7637838 |
T |
|
| Q |
203 |
c |
203 |
Q |
| |
|
| |
|
|
| T |
7637839 |
c |
7637839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 7615804 - 7616008
Alignment:
| Q |
3 |
accatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgcc |
102 |
Q |
| |
|
||||| ||||||||| || || ||||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | |
|
|
| T |
7615804 |
accatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatgccacaca |
7615903 |
T |
|
| Q |
103 |
gaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcctt |
202 |
Q |
| |
|
|| ||| ||||| || |||||||| || | |||||||||| || |||||||||| ||| || ||||| || || ||||| |||| ||| ||||||| |
|
|
| T |
7615904 |
gactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgaggtgcctt |
7616003 |
T |
|
| Q |
203 |
cgtag |
207 |
Q |
| |
|
||||| |
|
|
| T |
7616004 |
cgtag |
7616008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 7399159 - 7399248
Alignment:
| Q |
120 |
cacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || | ||||||||| ||||| || |||| | |||||||||||| ||||||||||| |
|
|
| T |
7399159 |
cacatggttaattgtaaaaccaatgaagataccatcgattaactctgttacttgtactgcaagtagtggttgtgatgtcccttcgtagtt |
7399248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 39075927 - 39076010
Alignment:
| Q |
119 |
ccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcctt |
202 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| || || | ||||||||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
39075927 |
ccacatggttaattgcaaaaccaatgaagataccatcgattaactctgttacttgtactgcaagtaatggttgtgatgtgcctt |
39076010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 5071 - 5210
Alignment:
| Q |
70 |
atttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaa |
169 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||| || |||||||||| ||| ||||||| || || ||||| |||||||||||||||||||| || | |
|
|
| T |
5071 |
atttcagcccacgaattgatgaaatgccaaaacgacgtaccatcaacaatcacgtggttaactgtgaagccaatgaagatgccgtcaactaactccgtta |
5170 |
T |
|
| Q |
170 |
cttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
209 |
Q |
| |
|
|||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
5171 |
cttggattgcaagtaatggttgtgatgttccttcgtagtt |
5210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 8910707 - 8910526
Alignment:
| Q |
9 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
108 |
Q |
| |
|
||||||||| || || ||||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||||||||||| ||| | || || |
|
|
| T |
8910707 |
tggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaaatgccacacggacttt |
8910608 |
T |
|
| Q |
109 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggtt |
190 |
Q |
| |
|
|| ||||| || ||||||||||| | ||||||| || || |||||||||| ||| || ||||| || || |||||||||| |
|
|
| T |
8910607 |
ccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggtt |
8910526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 8935648 - 8935444
Alignment:
| Q |
3 |
accatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgcc |
102 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | |
|
|
| T |
8935648 |
accatccggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccaagaattgatgaaatgccacaca |
8935549 |
T |
|
| Q |
103 |
gaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcctt |
202 |
Q |
| |
|
|| |||| |||| || | |||||||| | ||||||| || || ||||||| |||||| || ||||| || || |||||||||| ||||||||||| |
|
|
| T |
8935548 |
gactttccgtcaatgacagcgtggttaaatgagcaaccaatgaaaataccgtcaattaactcagttacttgaactgccaacaatggttttgatgtgcctt |
8935449 |
T |
|
| Q |
203 |
cgtag |
207 |
Q |
| |
|
||||| |
|
|
| T |
8935448 |
cgtag |
8935444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 8934573 - 8934503
Alignment:
| Q |
137 |
aaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtag |
207 |
Q |
| |
|
||||||| || || ||||||| |||||| || ||||| || || |||||||||| |||||||||||||||| |
|
|
| T |
8934573 |
aaccaatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgccttcgtag |
8934503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 34174825 - 34174896
Alignment:
| Q |
138 |
accaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
209 |
Q |
| |
|
|||||| ||||| || |||| ||||||||| ||||| || |||| ||||||||||||||| |||| |||||| |
|
|
| T |
34174825 |
accaatgaagataccatcaattaactctgttacttgaactgcaagcaatggttgtgatgtacctttgtagtt |
34174896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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